| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03402 |
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| Symbol | hrcU |
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| ID | 6303599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 73359 |
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| End bp | 74438 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642637393 |
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| Product | type III secretion system protein HrcU |
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| Protein accession | YP_001911278 |
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| Protein GI | 188574349 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGAAG AAAAAACCGA GAAGCCGACC GAGAAGAAAC TGCGGGATGC GCGCAAGGAC
GGGGAAGTTC CGGTCAGCCC GGACGTCACT GCAGCCGCGG TGCTCTTCGG CGCGTTATTG
GTGATGAAAT CGGCCGGCGA TTACTTCGTC GATCACATGC GCGCATTGAC GAGGATCGGC
TTCGATTTTT CGGAAAACAC ACGCGATGCA ACGGCGATAA ACCGTGCACT CGCCCATATC
GGCATCCAGG GATTGCTGTT GATGCTGCCG TTCCTGGCTG CGTGCCTGGT GGCTGGCTTG
GTAGGCGGTG CGTTTCAGAC GGGCCTGAAC GCCTCGCTCA AGCCGGTGTC GCCCAAGTTC
GATTCGCTCA ATCCCGCAAA CGGGGTCAAG AAACTTTTTT CGTTGAGAAG TCTCATCAAT
CTACTGAAGT TGATCATCAA GGCCATCCTG ATTGGCGTGG TGCTGTGGGT CGGTATCCGC
ACCCTCATGC CGATGATCAT TGGGCTTGCC TACGAGACAC CGCTTGACAT TTCCCAAATT
GCCTGGCGAA CCCTGAGCAT GCTCTTCGCA CTGGGCGTGC TGCTGTTCAT ACTGGTCGGC
GCTGCAGACT GGAGCGTGCA GCACTGGCTG TTCATCCGCG ACAAGCGAAT GAGCAAGGAC
GAGCAGAAGC GCGAATACAA GGAAAGCGAG GGCGACCCCG AAATCAAGGG CAAACGCAAG
GAATTCGCCA AGGAACTGGT CTTCGGCGAC CCCCGCCAAC GCGTCGCCAA GGCCAAGGTG
ATGGTGGTCA ACCCGACCCA TTACGCGGTG GCATTGGCCT ACGAGCCCGA TGACTTCGGC
TTGCCGCAGG TCGTTGCCAA GGGCGTAGAC GATGGCGCGC TGGAACTGCG CGCCTTTGCG
CATAACCAGG GCATTCCGAT CGTTGCCAAT CCGCCACTGG CACGTGCGCT GTATCAGGTG
GAATTGGGCG ACGCAATCCC CGAGCAATTG TTCGAAACGG TTGCGGTGGT GTTGCGCTGG
GTCGATGGAC TCGGTCGCGA CCACGGCGAC GGCGACGGCA ATGGAGCCCT GCCATGCTAG
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| Protein sequence | MSEEKTEKPT EKKLRDARKD GEVPVSPDVT AAAVLFGALL VMKSAGDYFV DHMRALTRIG
FDFSENTRDA TAINRALAHI GIQGLLLMLP FLAACLVAGL VGGAFQTGLN ASLKPVSPKF
DSLNPANGVK KLFSLRSLIN LLKLIIKAIL IGVVLWVGIR TLMPMIIGLA YETPLDISQI
AWRTLSMLFA LGVLLFILVG AADWSVQHWL FIRDKRMSKD EQKREYKESE GDPEIKGKRK
EFAKELVFGD PRQRVAKAKV MVVNPTHYAV ALAYEPDDFG LPQVVAKGVD DGALELRAFA
HNQGIPIVAN PPLARALYQV ELGDAIPEQL FETVAVVLRW VDGLGRDHGD GDGNGALPC
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