Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_03308 |
Symbol | |
ID | 6308496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 5092938 |
End bp | 5094242 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642642212 |
Product | tetracycline-efflux transporter |
Protein accession | YP_001916037 |
Protein GI | 188579108 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0389216 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCTCC CACCCGATTC CGCTCCCGCC CCGGGCCGGC GCCGCGCCGC ACTGATCTTC ATCTTCATCA CCGTCCTGAT CGACGTGCTG TCGTTCGGCG TGATCATTCC GGTGCTGCCG GGCCTGGTGC GGCACTTTAC CGGTGGCGAT TACGTGCAGG CCGCGGCCTG GATCGGCTGG TTCGGCTTTC TGTTCGCCGC CATCCAGTTC GTCTGCTCGC CGTTGCAGGG CGCGCTCTCC GACCGCTTCG GTCGCCGCCC GGTGATCCTG CTCTCGTGCC TGGGTCTGGG TCTGGACTTC ATCCTGATGG CCGTCGCCCA CAGCCTGCCC ATGCTGCTGC TGGCACGGGT GATCTCCGGC GTGTGCTCGG CCAGCTTCTC CACCGCCAAC GCCTACATCG CCGACGTCAC CGCCTCCGAC CAACGCGCCG GCGCGTTCGG CATGCTCGGT CCCGTATTCG GCATTGGCCT CGTCGCTGGC CCGTTGATCG GTGGTTGGCT GGGCAGCATG GGGTTACGCT GGCCGTTCTG GTTTGCCGCC GGCTTGGCCT TGTTGAATGT GCTGTACGGC TGGTTCGTGC TGCCCGAATC GCTGCCCGTC GAACGCCGCA CCGCACGGCT GGATTGGTCG CATGCCAATC CACTTGGCGC GCTCAAGCTG CTGCGCCGCT ATCCGCAGGT GTTCGGCCTG GCCTCGGTGG TGTTCCTGGC CAACCTGGCG CACTACGTGT ATCCCAGCAT CTTCGTGCTG TTCGCCGGCT ACCAATATCA CTGGGGCCCG CGCGAAGTGA GTTGGGTACT GGCCGGCGTC GGCGTGTGCA GCATCATCGT CAACGTGTTG CTGGTCGGCC GCCTGGTGCG CTGGCTCGGC GAACCCCGCG CCTTGCTGCT GGGGCTGGGC TGCGGGGTGA TCGGCTTTGT CATCTATGGG CTGGCCGATA GCGGCGCCGC GTTCCTGATC GGGGTGCCGA TCAGCGCGTT GTGGGCGCTC GCCGCCCCTT CCGCGCAAGC CCTGATCACC CGCGAGGTCG GCGCCGATGC GCAAGGTCGC GTGCAGGGCG CGCACCGGTC TGGTCAGCCT GGCCGGCATC GCCGGCCCGC TGTTGTTCGC CAATGTGTTC GCCTTGTTTA TCGGCAGCGG TGCGCCACTG CATCTGCCCG GCGCACCATG GTTGCTGGCC GGTGTGCTGC TCGCCGCAGG CTGGGGCATG GCCTGGAAAC GGGCAGGGCG GGGCACCGGC ACCGCGGCTG CAACGCAGGG ATAAAGACAA CCTATTCAGC TTGCGCTCGC GTCCGCTTTT TCTGA
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Protein sequence | MTLPPDSAPA PGRRRAALIF IFITVLIDVL SFGVIIPVLP GLVRHFTGGD YVQAAAWIGW FGFLFAAIQF VCSPLQGALS DRFGRRPVIL LSCLGLGLDF ILMAVAHSLP MLLLARVISG VCSASFSTAN AYIADVTASD QRAGAFGMLG PVFGIGLVAG PLIGGWLGSM GLRWPFWFAA GLALLNVLYG WFVLPESLPV ERRTARLDWS HANPLGALKL LRRYPQVFGL ASVVFLANLA HYVYPSIFVL FAGYQYHWGP REVSWVLAGV GVCSIIVNVL LVGRLVRWLG EPRALLLGLG CGVIGFVIYG LADSGAAFLI GVPISALWAL AAPSAQALIT REVGADAQGR VQGAHRSGQP GRHRRPAVVR QCVRLVYRQR CATASARRTM VAGRCAARRR LGHGLETGRA GHRHRGCNAG IKTTYSACAR VRFF
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