Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_03150 |
Symbol | |
ID | 6308036 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 4647133 |
End bp | 4648266 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642641763 |
Product | Tfp pilus assembly protein |
Protein accession | YP_001915600 |
Protein GI | 188578671 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.602648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATCG GCTACTTCCT GAAGCTGATG ACCGAAAAGA ATGCCTCGGA CATGTTCTTG ACCACCGGCG CGCCGGTGCA CATCAAGATC GAAGGCAAGC TTTACCCGCT CGGCAATACG GGATTGCCGC CGGGGATGGT CAAGAAAATC GCTTACTCAC TGATGGACGA GGGCCAGGTG CCGCAGTTCG AGCGCGAACT CGAACTCAAC ATTGCCATCG CCCTGCCCGA CGCCGGCCGC TTCCGCGTGA ACGCGTTCAA ACAGCGCGGT GAGGTAGGCA TGGTGATCCG TGCCATTCGC AGCCGGATCC CCAGCATCGA AGAGCTCCAC CTGCCACAGG TGCTCAAGGA CATCATCATG GCCCCGCGCG GGCTGGTGCT GGTGGTGGGC TCGACCGGCT CGGGCAAGTC GACCTCGCTT GCCGCGATGA TCGACCACCG CAACAGCACC ACCACCGGGC ACATCCTCAC CATCGAGGAC CCGATCGAAT ATCTGCACAA GCACAAGATG TCGATCGTGA ACCAGCGCGA GGTGGGCCTG GATACCCATG CTTTCCAGAG CGCGCTGAAG AATGCGATGC GCGAGGCGCC GGACGTGATC CTGATCGGCG AGATCCTGGA CGCCGAGACC ATGGAGGCAG CGATCGCCTT CGCCGAAACC GGCCACCTGT GCCTGGCCAC GCTGCACTCC AACAATGCCG ACCAGACCAT CGAGCGTATC CTCAATTTCT TCCCGGAAAG CGCGCACAAT AACGTGCTGA TGAACCTGGC GCTCAACCTG CGCGCGGTCA TCTCCCAGCG TCTGGTCAAG GGCCTGGACG GCCGTCGCCG CCCGGCCACC GAAGTGCTGC TCAATACGCC GATGATCCGC GACCTGCTAC GCCGCGGCCA GGTGCACGAG GTCAAGCAGG CGATGGAAGA GTCGCTGGAA GAAGGCATGC AGACCTTCGA CCAGTGCCTG TTCCGCATGG TGAAGTCGGG CGAAATCGAG CAGGAAGAAG CGCTGCGTGC CGCCGACTCG CGCGACGGCC TGGCGCTGAA GTTCCGTCTC TCCGAAGACG GCTCCGGCGA GCACGACCCG TACGCGGATT ACGAAACGCC GGCTGCGCCG AAGATCAGCC ACGGGTTTAT TTAA
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Protein sequence | MDIGYFLKLM TEKNASDMFL TTGAPVHIKI EGKLYPLGNT GLPPGMVKKI AYSLMDEGQV PQFERELELN IAIALPDAGR FRVNAFKQRG EVGMVIRAIR SRIPSIEELH LPQVLKDIIM APRGLVLVVG STGSGKSTSL AAMIDHRNST TTGHILTIED PIEYLHKHKM SIVNQREVGL DTHAFQSALK NAMREAPDVI LIGEILDAET MEAAIAFAET GHLCLATLHS NNADQTIERI LNFFPESAHN NVLMNLALNL RAVISQRLVK GLDGRRRPAT EVLLNTPMIR DLLRRGQVHE VKQAMEESLE EGMQTFDQCL FRMVKSGEIE QEEALRAADS RDGLALKFRL SEDGSGEHDP YADYETPAAP KISHGFI
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