| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02698 |
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| Symbol | csd |
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| ID | 6307934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 4538142 |
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| End bp | 4539008 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642641663 |
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| Product | crispr-associated protein, Csd2 family |
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| Protein accession | YP_001915500 |
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| Protein GI | 188578571 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3649] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.820948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCA TCGCCAACCG CTACGAATTC GTCTACCTGT TCGACGTCAT CAACGGCAAT
CCCAACGGCG ACCCCGACGC CGGCAACCTG CCGCGCCTGG ATCCGGAAAC CAATCGCGGC
CTGGTCACCG ACGTTGCACT CAAGCGCAAG ATCCGTAACT ACGTCGCGCT GGAGCAGGAG
GCCCAAGCCG GCTACGCAAT CTACATGCAG GAAAAGTCGG TGTTGAACAA CCAACACAAG
CAGGCCTATG CCGCGCTGGG GATCGAACAC GAAGCCAAGA AGCTGCCCAA GGACGAAGCC
AAGGCACGCG AGTTGACGTC GTGGATGTGC AAAAACTTCT TCGACGTGCG CACCTTCGGC
GCGGTGATGA CCACCGAGGT CAACTCCGGA CAGGTCCGTG GCCCGGTGCA ACTGGCCTTC
GCCAGTTCAG TGGAGCCGGT GCTGCCGCTG GAAGTGTCGA TCACCCGCGT AGCCGTCACC
AACGAGAAGG ATCTGGAGAA AGAGCGCACC ATGGGCCGCA AGCACATCCT GCCCTACGGC
CTGTATCGCG CACACGGCTT CATCTCCGCC AAGCTTGCCG AACGCACAGG CTTCTCCGAG
GACGACCTGC AACTGCTGTG GCGCGCATTG ACCAACCTCT TCGAGCACGA CCGTTCCGCC
GCACGCGGCG AGATGTCGGC GCGCAAGCTG ATCGTGTTCA AGCACGAGCA CCAGATGGGC
AATGCCCCGG CGCACGTGTT ATTCGACAAG GTCACGGTCG AGCGCGTCGC CGAGGTGGAC
GCCGGGCCGG CACGCAGCTT CGCCGACTAC CGGGTCACGA TCGATCGCGC CCTGCCGGCG
GGCGTCAGCG TCGAAGAACT GTTCTGA
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| Protein sequence | MSAIANRYEF VYLFDVINGN PNGDPDAGNL PRLDPETNRG LVTDVALKRK IRNYVALEQE
AQAGYAIYMQ EKSVLNNQHK QAYAALGIEH EAKKLPKDEA KARELTSWMC KNFFDVRTFG
AVMTTEVNSG QVRGPVQLAF ASSVEPVLPL EVSITRVAVT NEKDLEKERT MGRKHILPYG
LYRAHGFISA KLAERTGFSE DDLQLLWRAL TNLFEHDRSA ARGEMSARKL IVFKHEHQMG
NAPAHVLFDK VTVERVAEVD AGPARSFADY RVTIDRALPA GVSVEELF
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