Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_02686 |
Symbol | gspD |
ID | 6307946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 4555363 |
End bp | 4557663 |
Gene Length | 2301 bp |
Protein Length | 766 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642641675 |
Product | general secretion pathway protein D |
Protein accession | YP_001915512 |
Protein GI | 188578583 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.91159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCCGC GCCTGTTTCC CGTATCCCTG CTGATTGGCC TGCTGGCCGG TTGCGCCACC ACTCCGCCGC CGGACGTGCG CCGCGACGCA CGCTTGGATC CGAACGTCGG CGCTGCCGGC GCCACTCAAA CCACCGCCGA GCAGAGTGCC GACGGTAAGG CCAGCGCCAA GCCCAGCCCG GTGATCCGGC GCGGCAGCGG CACCATGATC AACCAGAGCG CCGCGTCCGC GCCGGCGCCC ACGCTGGGCA TGGCCAGCAG CGGCAGCGCT ACCTTCAATT TCGAAGGCGA ATCGGTGCAG GCCGTGGTCA AGGCCATCCT GGGCGATATG CTTGGTCAGA ACTACGTCAT CGCGCCCGGC GTGCAGGGCA CCGTGACCCT GGCCACGCCC AATCCGGTCT CGCCCGCGCA GGCGCTGAAC CTGCTGGAGA TGGTGCTGGG CTGGAACAAT GCCCGCATGG TGTTCAGCGG TGGCCGCTAC AACATCGTGC CGGCCGACCA GGCATTGGCC GGCACCGTCG CGCCCAGCAC CGCCTCGCCC TCGGCCGCGC GCGGTTTCGA GGTACGCGTG GTGCCGCTGA AGTACATCTC GGCCAGCGAA ATGAAGAAGG TGCTCGAGCC CTATGCGCGC CCGAATGCCA TCGTCGGTAC CGACCCGGCG CGCAACGTGA TCACCCTGGG CGGTACCCGC GCCGAGCTGG AAAACTACCT GCGCACCGTG CAGATCTTCG ACGTGGACTG GTTGTCGGGC ATGTCGGTGG GCGTGTTCCC GATCCAGTCC GGCAAGGCCG AAAAGGTCAG CGCCGATCTG GAGAAGGTAT TCGGCGAGCA GAGCAAGACC CCCAGCGCCG GCATGTTCCG CTTCATGCCG CTGGAAAACG CCAATGCCTT GCTGGTGATT ACTCCGCAGC CGCGCTACCT GGACCAGATC CAGCAGTGGC TGGACCGTAT CGACAGTGCC GGCGGCGGGG TACGGCTGTT TTCGTACGAG TTGAAGTACA TCAAGGCCAA GGACCTGGCG GATCGTCTGT CGGAAGTGTT CGGCGGCCAC AGCAGCGGCG GCGATTCCAA TGCATCGCTG GTGCCAGGGT CGGAAACCAG CGTGCTTGGC GGCGCGCTCG GCAATCGCGA CAGCAGCATG GGTGGCAGCT CCGGCATGAC CGGCGGCAGC ATCGGCGACA GCGGCGATGG CAGCTCGTCG GGCAGCAGCT TCGGCAGCAG TGGAGGTGGC AGCAGCAGTG GTGGTCTGGG TAACGGCAGC CTGCAGCTGT CGCCGCGCAG CAATGGCAAC GGCGCGGTGA CGCTGGATGT GGCCGGCGAC AAGGTGGGTG TATCGGCGGT GGCCGAGACC AATACCTTGC TGGTGCGCTC CACGCCGCAG GCCTGGAGCT CGATCCGCGA TGTCATCGAA AAGCTCGACG TGATGCCGAT GCAGGTGCAT ATCGAAGCGC AGGTGGCCGA GGTGAATTTG ACTGGCAAGC TGCAGTATGG TGTGAATTGG TACTTCGAGA ACTCGGTGAA TGCTGCAGCG GATTCGGCCG CCAATAGCAC CGGCATTGGC GCTGGTGCCG GCTTGGCAAG CGCAGCAGGG AGAAACATTT GGGGAGATAT CGCTGGGAAA ATCACCGGTG AAAAAGGCGC TCAGTGGACG TTCTTGGGCA AGAATGCGGC CTCGATCATC CATGCACTTG ATGAGGTGAC TAATGTGCGT CTTCTGCAAA CGCCTTCTGT TTTTGTACGC AACAACGCCG AGGCAACGCT GAATGTTGGC TCACGTATTG CGATCAATTC GACGTCTATC AATACCGGTC TCGGAAGCGA CAGCAGCTTT TCCTCGGTGC AGTACATCGA CACTGGCGTA ATCCTGAAAG TGCGTCCGCG TGTGACCAAG GACGGCATGG TGTTCTTGGA TATCGTGCAG GAAGTCAGTA GTCCTGGTGA TCGTCCCGCT GCCTGTACTT CGGCTACTGC GACGGTCAAT GCCGCCGCTT GTAACGTTGA TATCAATACG CGCCGTGTAA AGACGGAAGC TGCCGTGCAG AGCGGCGATA CGATCATGTT GGCCGGTCTG ATCGACGATA CGACCAGTGA TGGCAGTAAC GGAATTCCCT TCCTGAGCAA GCTACCGGTT GTTGGCGCGC TGTTTGGATC CAAGAGCCGT AACAGCGCCC GCCGCGAAGT CATCGTGCTG ATCACTCCCT CGATCGTGCG CAACCCGCAG GAAGCGCGCA ATCTCACCGA CGAATATGGT CAGAAATTCA AGGCCATGGA GCCGCTGAAG CCCAGCCAGA AACCGCAATG A
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Protein sequence | MTPRLFPVSL LIGLLAGCAT TPPPDVRRDA RLDPNVGAAG ATQTTAEQSA DGKASAKPSP VIRRGSGTMI NQSAASAPAP TLGMASSGSA TFNFEGESVQ AVVKAILGDM LGQNYVIAPG VQGTVTLATP NPVSPAQALN LLEMVLGWNN ARMVFSGGRY NIVPADQALA GTVAPSTASP SAARGFEVRV VPLKYISASE MKKVLEPYAR PNAIVGTDPA RNVITLGGTR AELENYLRTV QIFDVDWLSG MSVGVFPIQS GKAEKVSADL EKVFGEQSKT PSAGMFRFMP LENANALLVI TPQPRYLDQI QQWLDRIDSA GGGVRLFSYE LKYIKAKDLA DRLSEVFGGH SSGGDSNASL VPGSETSVLG GALGNRDSSM GGSSGMTGGS IGDSGDGSSS GSSFGSSGGG SSSGGLGNGS LQLSPRSNGN GAVTLDVAGD KVGVSAVAET NTLLVRSTPQ AWSSIRDVIE KLDVMPMQVH IEAQVAEVNL TGKLQYGVNW YFENSVNAAA DSAANSTGIG AGAGLASAAG RNIWGDIAGK ITGEKGAQWT FLGKNAASII HALDEVTNVR LLQTPSVFVR NNAEATLNVG SRIAINSTSI NTGLGSDSSF SSVQYIDTGV ILKVRPRVTK DGMVFLDIVQ EVSSPGDRPA ACTSATATVN AAACNVDINT RRVKTEAAVQ SGDTIMLAGL IDDTTSDGSN GIPFLSKLPV VGALFGSKSR NSARREVIVL ITPSIVRNPQ EARNLTDEYG QKFKAMEPLK PSQKPQ
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