Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_02621 |
Symbol | raxC |
ID | 6307867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 4470839 |
End bp | 4472170 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642641598 |
Product | outer membrane protein required for AvrXa21 activity C (raxC) |
Protein accession | YP_001915436 |
Protein GI | 188578507 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGCGA ACGCCACCGA CCTGCTGCAG GTCTACGAAA TGGCGCGCAA CGGTGATCCG CAGCTGGCCG TGGCCGAGTC CACGCGCCTG GTGAATCGGG AAGGTCAGGT ACAGGCGCGT GCGGCGTTGC TGCCGCAGCT GGACGGCAGC GCCGGATACA CCCAGTCGCA TCGTGAGCTG GAGGGCGTCG GACGCCCCAC GACCAAACAG CGCCAGTACG CGATTCAGGG TAGCCAGACC ATTTTCAATT GGGCGCAGTT CTCTAACCTG CGCGCGCAGC GCGAAGTGAC CAGGGCTGCA GATTTCACTT TGGCATCGGC CAACAACGAT CTGATGACGC GTACCTCGGC GGCGTATTTC CAGGTACTGG TGGGGATCGA GTCGCTGGCG GCAGCCGAGA CCAACGAAGC GGCAGCAAAG AAGCAATTCG ACTACGCCGA CAAGCGTCTG GAAGTGGGCC TGGCACCGAT CACCGACGTG CACGAAGCCC GCGCTCAGTA CGACCAGGCG CGCGCCGACA CCATCAACGC CCGCAACACG TTGAAGGATT ACTACCAGGC ACTGACTGAA CTCACCGGCC AGCCCGTAGT TGGTTTGCGT GCATTGCCCG ACGAGTTCCG CCCGGAAGTG CCGGCCGCTT ATAGCAATGT CGATCAGTTG GTCGCTACCG CCATTGCCGA TAATCCCGCG TTGAGGGCGC AGCAGTTGCA GGTCAGTGCC GCCGAGGCAC ACGTCAGTGC TGCGCGTGCC GGCCATCTGC CGACCCTCAA TCTTTCCGGC AGCATGGGAC GGACCAATAG CTGGGGCGGT GGCAGCGATG TCGATACAGC TGCCGGCAAT TTCATGACCA ATAATGGCAA TATCGATACC AATTCCATCG GCATCACCCT ATCGATTCCG ATCTTCTCGG GTGGTGCGAC CCAGTCGGCC GTGCGTCAGG CCCTGTCGCA GCGCGACATC CAGCAGGACA TCTACGAGCA GCAGAAGCGC GCGCTGGATC GCAACACGCG CAATGCCTAC CAGACCGTGG TTGCCGGCAT CAGCGAAGTG GAAGCCCGCC GTCTGGCCGT GGTGTCGGCG CAAGCCGCCT ACGACGCCTC GCAGGTGGGC CTGGAAGTCG GTACGCGTAC CGTGCTGGAT GTCGTGCAGA ACCAGCGCAC GCTGTTCCAG GCGCAGCTGA ACTACGCGCA GTCGCGTTAC ACCTTCCTGC AGAACCGACT GCTGCTTGGT CAAGCCATCG GCAAGCTCGA CATCACCGAC TTGCAGGATG TGAATCGCCT GCTGTCGCAG GATGCCGAGT CCAAGCTGCA GGGCAGTGGT TCGTTGCAGT AA
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Protein sequence | MAANATDLLQ VYEMARNGDP QLAVAESTRL VNREGQVQAR AALLPQLDGS AGYTQSHREL EGVGRPTTKQ RQYAIQGSQT IFNWAQFSNL RAQREVTRAA DFTLASANND LMTRTSAAYF QVLVGIESLA AAETNEAAAK KQFDYADKRL EVGLAPITDV HEARAQYDQA RADTINARNT LKDYYQALTE LTGQPVVGLR ALPDEFRPEV PAAYSNVDQL VATAIADNPA LRAQQLQVSA AEAHVSAARA GHLPTLNLSG SMGRTNSWGG GSDVDTAAGN FMTNNGNIDT NSIGITLSIP IFSGGATQSA VRQALSQRDI QQDIYEQQKR ALDRNTRNAY QTVVAGISEV EARRLAVVSA QAAYDASQVG LEVGTRTVLD VVQNQRTLFQ AQLNYAQSRY TFLQNRLLLG QAIGKLDITD LQDVNRLLSQ DAESKLQGSG SLQ
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