| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01517 |
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| Symbol | |
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| ID | 6306798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 3399208 |
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| End bp | 3402924 |
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| Gene Length | 3717 bp |
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| Protein Length | 1238 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642640548 |
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| Product | ribonuclease E |
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| Protein accession | YP_001914404 |
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| Protein GI | 188577475 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGAA TGCTGATCAA CGCAACGCAG GCCGAAGAGC TGCGCGTGGC GATTGTGGAC
GGCCAGACCC TGTACGACAT CGACATCGAA CAGCCGTCCA AGGAACAAAA GAAGTCCAAC
ATCTATAAGG GCCGTATTAC CCGGCTCGAG CCGTCTCTGG AAGCGGCGTT CGTGGACTAT
GGCGCCGAGC GCCATGGCTT CTTGCCGCTG AAGGAAATTT CCCGCGATTA TTTCCAGGCC
GGCGTCGACC ACAACAAGTC GACCATTCGC GAGCTGCTGC GCGAAGGCCA AGAAATCGTG
GTGCAGGTCG ACAAGGAAGA ACGCGGCAAC AAGGGCGCTG CCCTGACCAC GTTCATCTCG
CTGGCCGGTC GCTACATGGT GCTGATGCCC AATTCGCCGA GCGCCGGTGG CGTCTCACGC
CGCATCGAAG GCGAAGACCG CGCCGCACTG AAGGAAGCGC TGGACAAGCT GGATATTCCG
GACGACATGG GCGTGATCAT CCGCACCGCC GGTGTGGGCC GTGATGCCGA AGAGCTGCAG
TGGGATCTGG ACTATCTGCT GCAGACCTGG AAGGCAATTG CCGAGGCTGC GCTGAGCAAG
CCGGCCGCGT TCCTGATCTA CCAGGAATCG CGCCTGATCA TCCGCGCCCT GCGCGACTAC
CTGCGTGCCG ACGTCGGCGA GATCCTGGTC GATACACCGG AGCTGTACGC CGACGCCCAG
GAATTCATGA AGCAGGTAAT GCCGCAAAGC CTGCGCAAGC TCAAGCACTA CACCGACGAC
ATCCCGCTGT TCAATCGCTT CCAGATCGAA TCGCAGATCG AAGGCGCCTA CGAGCGCAAC
GTGCGCCTGC CCTCGGGCGG CTCGATCGTG GTCGATCAGA CCGAAGCGCT GACTGCGGTC
GACGTCAACT CCTCGCGCGC CACCAAGGGC AGCGACATCG AAGAAACCGC GTTCCAGACC
AACCTGGAAG CGGCCGAAGA AGTCGCACGC CAGCTGCGCC TGCGCGACCT GGGTGGCCTG
GTGGTCATCG ACTTCATCGA CATGGCCTCG TCCAAGCATC AGCGCGAAGT CGAAAACAAG
CTGCAGAACG CGCTCAAGTA CGACCGCGCC CGCGTGCAGC TGGGCCGTAT CTCGCGCTTC
GGCCTGATGG AAATGAGCCG CCAGCGCCTG CGTCCGAGCC TGGGCGAATC CAGCCAGATC
GTCTGCCCGC GTTGTGATGG CCATGGCCGC ATGCGCAGCG TCGAGTCGCT GTCGCTGTCG
ATCATCCGCG TGGCCGAAGA ACACGCGATG AAGGAAAACA CCGGCCAGGT GCTGGTGCAG
GCGCCAGTGG AAATCGCCAA CTACCTGCTC AACGAAAAGC GCAGCGCGCT GCGCGAGATC
GAACAACGTC ACGAGTCGCC GATCATCATC GTCGCCGACG AACAGTTGCA CACCCCGCAC
TACGAAGTCA CGCGCCTGCG CGAAAACGAG TTGGGCGAAG ACAGCGGCAA GCCGAGCTAT
CAGCGCGGCA CCCCGCGCAA GCTGCCGGTG CACGCGCTGA CCAAGGCGCA ATTGAATATC
CCGGCACCTC CGGCAGTCAC CTCGATCAAG CCGAGCCAGC CGGCGCCGGT GCGTGAAGAG
ACCCCGGCCC CGGTGGCGCC CGTCGCCGCT CCGGCACCGG TGGTGACTGT GCCGATTCCG
GCCCCGGTCA CCGGCGTGGT CGGCTGGTTG AAGCGCATCT TCGGCGGCGT CGAGCCGCTC
GCTCCTGCTC CCGAGTCGAT TCCGCGCCCG CGTCAGAACG ATGCCGGCCG CAATCACCGT
AACGAACGCG GAGAGCGTGG CGGTCAACGT CGCGACGGTC GCGATGCGCG TAACGGCGGT
CATAGCGGCA ACCAGCAGCG CGGCAATGGC AATGGCGCCA ACAAGGAACG CCGTGACGAG
CGCCGCCAGC CAGCCAGCGG CCAAGGCGCG CAGAACGGTG CACAGGCACA GCAACAGGCG
CAGACGCCCA AGCCGCCGCG CAATGAAGCG CAGTCACCGA AGCAACAGCA GCCGCAGCAG
GCTCAGCAAC AGAAGCCCAA GCCGCAGAAC CAGACCCCGC GTCCGCCGCG TACACCTGCA
CAGCAGGACG GCGCGCAGGC CGAGCGTCAG CCGCGTCCGG CACGTCAGGA TGAAGGCATG
GCCGCAGCAC AGACCGTCAC CTCGACTGCC GCAATGGCAA CGACGTCGAG CGTGGTGGCT
GCCATTACCG ATGCCGCTGC ACCTGCCACT GCGCAGACCA ACGCTAACGA AGCGGCGCAG
GCGCATGCGG TTGACGTCAC GGTGAGCGCG TCCACCGCTG ATCCCGGTGC AGACGCAAGT
GTGGCTGCAC CGGCCCAGGA TGCCGCGGGC GACGATGCAG CCAATGGCGA AGGCGGAAGC
CGTCGTCGCC GCGGTCGTCG TGGTGGCCGT CGTCGTCGTC GTGGCGTTGG TGCCAACGGC
GGCGAAGGCG GAGCAAGCGT CGATGGTCTG GAAGGCGACG ATCTGGACGG TGATGCCGAC
AACGATCTCG ACAGCGACAG CGAAGGCGAC GCCGCCGCTG CTCAGGCGCA TGCCTCGGCC
GCACCGCGCG CCGGCCAGCC GGAGTTCGAT TTCGACGACG ACGCACCGGC ACCCACCGTC
CGTGCCAAGC CCGAACCCAC TGCGCAGGCA GCTGCCAAAC CGCGCCCGGT TCCCAAGGAG
CGCGCGGAGC CGCAAGTCGG CAACGACACG TCGTCGACCA CTGCGCCGGT TTCCAACACC
GTGCCGGCAT CGCAGCCGCC AGTAGCAACA CCCGTTGCCA AGGCTGACAC CAACCACGAG
CGCCCCGCTG CGCCGACCGT TGCCGCAGAT GCGCCTGCCA AGCCCGCGCC CGCTGCCACA
GCGTCGACGG CCGTCAACGC AGATGTTGCG GCAACGCAAG CGGTGAAACA GCGCCCGGCT
CCGGTCGCGC AACACGCTCC AGCTGCCCCG GCACCGGTTG CTGCTCCGGC ACCCGTGGCA
TCTACGCCGG TACCGGCTGG TGCTGCTGTA GCTCCCGTCG CCGAGACCGC ATCGACGGCA
CCGGTCGCCA CTCCGTCGGC TCCGGCATCA ACTGTCGCAT CGCCTGTGTC AAACGTTGCT
GCAACAAGCA CACAGCACCA GCCTTTGGGT TCGGCGTCTG CACGTGCTGC TGCGTCTGAC
ACGGACAAGG CTGCGGCACC GAACGCTGAC CGGCAGCAGC GCGCTGCTGC GGCGGACGTT
GCAACGCCTG CGACGACGCA AGCGGCACCG GTACAGACCA CACCTGTAAA GCAGACTGCC
GATCTATCGG CACCTGTGGC AGCGATGCCG GCTGCACAGG CCGAGGTGGT TACGGCCACG
TCTCCACACG CCGAACCGCC TGCTGCGCAG GCGCCATCGT CCGAGGTGGC AGTGACCGCT
ACATCGACGC TCGTGCAGGC AAGCCCGACT GCAGACGCTA CGCCAGTGCG GAAGCGGTAT
GCCCCGGTGC AAACCACCAT GCTCGATACA TTGAGCCCGA ACGATGCTGC AACGTCAGCA
CCCGCGGCCA GCGAACATCC TGCGCCCGCT GCAGCAGCGC AGGAGGCAGT GGCAGTGGCA
GTGGCAGACA AGCCCAAGCC GACGGTGGTT GTATCCGAAG TCAAGCCTGT TGCCCCATCG
ACGGAGGCCG ACAAGGCGCA GGATGATGAC AGCAACAAGC CGCGTGGCGA TCACTGA
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| Protein sequence | MKRMLINATQ AEELRVAIVD GQTLYDIDIE QPSKEQKKSN IYKGRITRLE PSLEAAFVDY
GAERHGFLPL KEISRDYFQA GVDHNKSTIR ELLREGQEIV VQVDKEERGN KGAALTTFIS
LAGRYMVLMP NSPSAGGVSR RIEGEDRAAL KEALDKLDIP DDMGVIIRTA GVGRDAEELQ
WDLDYLLQTW KAIAEAALSK PAAFLIYQES RLIIRALRDY LRADVGEILV DTPELYADAQ
EFMKQVMPQS LRKLKHYTDD IPLFNRFQIE SQIEGAYERN VRLPSGGSIV VDQTEALTAV
DVNSSRATKG SDIEETAFQT NLEAAEEVAR QLRLRDLGGL VVIDFIDMAS SKHQREVENK
LQNALKYDRA RVQLGRISRF GLMEMSRQRL RPSLGESSQI VCPRCDGHGR MRSVESLSLS
IIRVAEEHAM KENTGQVLVQ APVEIANYLL NEKRSALREI EQRHESPIII VADEQLHTPH
YEVTRLRENE LGEDSGKPSY QRGTPRKLPV HALTKAQLNI PAPPAVTSIK PSQPAPVREE
TPAPVAPVAA PAPVVTVPIP APVTGVVGWL KRIFGGVEPL APAPESIPRP RQNDAGRNHR
NERGERGGQR RDGRDARNGG HSGNQQRGNG NGANKERRDE RRQPASGQGA QNGAQAQQQA
QTPKPPRNEA QSPKQQQPQQ AQQQKPKPQN QTPRPPRTPA QQDGAQAERQ PRPARQDEGM
AAAQTVTSTA AMATTSSVVA AITDAAAPAT AQTNANEAAQ AHAVDVTVSA STADPGADAS
VAAPAQDAAG DDAANGEGGS RRRRGRRGGR RRRRGVGANG GEGGASVDGL EGDDLDGDAD
NDLDSDSEGD AAAAQAHASA APRAGQPEFD FDDDAPAPTV RAKPEPTAQA AAKPRPVPKE
RAEPQVGNDT SSTTAPVSNT VPASQPPVAT PVAKADTNHE RPAAPTVAAD APAKPAPAAT
ASTAVNADVA ATQAVKQRPA PVAQHAPAAP APVAAPAPVA STPVPAGAAV APVAETASTA
PVATPSAPAS TVASPVSNVA ATSTQHQPLG SASARAAASD TDKAAAPNAD RQQRAAAADV
ATPATTQAAP VQTTPVKQTA DLSAPVAAMP AAQAEVVTAT SPHAEPPAAQ APSSEVAVTA
TSTLVQASPT ADATPVRKRY APVQTTMLDT LSPNDAATSA PAASEHPAPA AAAQEAVAVA
VADKPKPTVV VSEVKPVAPS TEADKAQDDD SNKPRGDH
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