| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01392 |
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| Symbol | gumC |
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| ID | 6306918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3512572 |
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| End bp | 3513990 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642640665 |
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| Product | exopolysaccharide xanthan biosynthesis chain length determinant protein GumC |
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| Protein accession | YP_001914519 |
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| Protein GI | 188577590 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.402956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCCG ACAATCGTCC CTCTTCGTCT CATCGTCACT GGCATCTCGA ACTTGCCGAT
GTGGGCTTGC TCGATTACTG GCGCGCCCTG GTGTCGCAGC GCTGGTTGAT CTTCGGCATC
GCGCTGGCGG GACTGTTGCT GGCGCTGGTC ATCACGCTGC TGATGCCGGA GAAGTACCGC
GCGACCAGCA CGCTGCAGAT CGAGCGCGAT TCGCTCAACG TGGTGAATGT CGACAATCTG
ATGCCGGTGG AATCACCGCA GGATCGCGAC TTCTATCAAA CGCAGTATCA ATTGCTGCAG
AGCCGTTCGC TGGCGCGCGC GGTGATCCGC GAAGCAAAGC TCGACAAGGA GCCGGCGTTC
AAGGATCAGG TCGACGAGGC GTTGGAGAAA GCCGCCGCGA AGAATCCCGA GGCCGGTAAA
TCGGTGGATT CGCGTCAGGC GATCATCGAG CGCAGCCTCA CCGATACGTT GCTGGACGGT
CTGGTGGTCG AGCCGATCCT CAATTCGCGC CTGGTCTACG TCCATTACGA TTCGCAGGAT
CCGGTGCTGT CGGCAAAGAT CGCCAACACG TACGCAAAGA TGTTCATCAT CAGCACGCAG
GAGCGGCGCA TGAAAGCGTC CTCTTTTGCG ACCACGTTCC TCGCTGAGCG ATTGGAGCAG
TTGCGCGGCA AGGTGGAGGA CTCGGAAAAG TCGCTGGTTG CGTACTCGAC CGATGAGCAG
ATCGTTTCGG TGGGCGACGA CAAACCTTCT TTGCCTGCCC AGAACTTGAC CGATCTCAAT
GCGTTGCTGG CTTCAGCGCA AGATGTCCGA ATCAAGGCCG AGGCTGCCTG GCGCCAAGCA
GAAAGCGGCG ATGTTATGTC GCTGCCGCAG GTGCTCAGCA GCCCGCTGAT CCAGAGCCTG
CGCGCCCAGC AAGTGCAGCT GACCAGCGAA TACCAGCAGA AGCTGTCGAC CTTCAAGCCG
GACTACCCGG AGATGCAGCG CCTGAATGCG CAGATCGAAG AGTCGCGTCG GCAGATCAAT
GGCGAGGTCA TCAATGTTCG CCAGTCGTTG AAGGCGACCT ACGACGCATC GGTGCATCAG
GAGCAGTTGC TCAACGAACG CATCGCCGGT TTGCGGAACA ACGAGCTTGA TCTGCAGGGC
CGCAGCATTC GTTACAACAT GCTCAAGCGC GACGTCGACA CGAACCGTCA GCTCTACGAT
GCGCTTCTTC AACGCTATAA AGAAATCGGT GTTGCAGGCA ATATCGGCGC CAACAACGTG
ACCATCGTCG ATACCGCAGA TGTGCCTACG TCGAAGACTT CGCCGAAACT GAAATTGAAC
CTCGCATTGG GACTCATCTT TGGCGTATTC CTAGGTTTGG CTGTGGCTCT GGTGCGGTAC
TTCCTGCGCG TCAATGGGCA GGAAACGCGG TTCAACTGA
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| Protein sequence | MNSDNRPSSS HRHWHLELAD VGLLDYWRAL VSQRWLIFGI ALAGLLLALV ITLLMPEKYR
ATSTLQIERD SLNVVNVDNL MPVESPQDRD FYQTQYQLLQ SRSLARAVIR EAKLDKEPAF
KDQVDEALEK AAAKNPEAGK SVDSRQAIIE RSLTDTLLDG LVVEPILNSR LVYVHYDSQD
PVLSAKIANT YAKMFIISTQ ERRMKASSFA TTFLAERLEQ LRGKVEDSEK SLVAYSTDEQ
IVSVGDDKPS LPAQNLTDLN ALLASAQDVR IKAEAAWRQA ESGDVMSLPQ VLSSPLIQSL
RAQQVQLTSE YQQKLSTFKP DYPEMQRLNA QIEESRRQIN GEVINVRQSL KATYDASVHQ
EQLLNERIAG LRNNELDLQG RSIRYNMLKR DVDTNRQLYD ALLQRYKEIG VAGNIGANNV
TIVDTADVPT SKTSPKLKLN LALGLIFGVF LGLAVALVRY FLRVNGQETR FN
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