Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_01392 |
Symbol | gumC |
ID | 6306918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 3512572 |
End bp | 3513990 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642640665 |
Product | exopolysaccharide xanthan biosynthesis chain length determinant protein GumC |
Protein accession | YP_001914519 |
Protein GI | 188577590 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.402956 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCCG ACAATCGTCC CTCTTCGTCT CATCGTCACT GGCATCTCGA ACTTGCCGAT GTGGGCTTGC TCGATTACTG GCGCGCCCTG GTGTCGCAGC GCTGGTTGAT CTTCGGCATC GCGCTGGCGG GACTGTTGCT GGCGCTGGTC ATCACGCTGC TGATGCCGGA GAAGTACCGC GCGACCAGCA CGCTGCAGAT CGAGCGCGAT TCGCTCAACG TGGTGAATGT CGACAATCTG ATGCCGGTGG AATCACCGCA GGATCGCGAC TTCTATCAAA CGCAGTATCA ATTGCTGCAG AGCCGTTCGC TGGCGCGCGC GGTGATCCGC GAAGCAAAGC TCGACAAGGA GCCGGCGTTC AAGGATCAGG TCGACGAGGC GTTGGAGAAA GCCGCCGCGA AGAATCCCGA GGCCGGTAAA TCGGTGGATT CGCGTCAGGC GATCATCGAG CGCAGCCTCA CCGATACGTT GCTGGACGGT CTGGTGGTCG AGCCGATCCT CAATTCGCGC CTGGTCTACG TCCATTACGA TTCGCAGGAT CCGGTGCTGT CGGCAAAGAT CGCCAACACG TACGCAAAGA TGTTCATCAT CAGCACGCAG GAGCGGCGCA TGAAAGCGTC CTCTTTTGCG ACCACGTTCC TCGCTGAGCG ATTGGAGCAG TTGCGCGGCA AGGTGGAGGA CTCGGAAAAG TCGCTGGTTG CGTACTCGAC CGATGAGCAG ATCGTTTCGG TGGGCGACGA CAAACCTTCT TTGCCTGCCC AGAACTTGAC CGATCTCAAT GCGTTGCTGG CTTCAGCGCA AGATGTCCGA ATCAAGGCCG AGGCTGCCTG GCGCCAAGCA GAAAGCGGCG ATGTTATGTC GCTGCCGCAG GTGCTCAGCA GCCCGCTGAT CCAGAGCCTG CGCGCCCAGC AAGTGCAGCT GACCAGCGAA TACCAGCAGA AGCTGTCGAC CTTCAAGCCG GACTACCCGG AGATGCAGCG CCTGAATGCG CAGATCGAAG AGTCGCGTCG GCAGATCAAT GGCGAGGTCA TCAATGTTCG CCAGTCGTTG AAGGCGACCT ACGACGCATC GGTGCATCAG GAGCAGTTGC TCAACGAACG CATCGCCGGT TTGCGGAACA ACGAGCTTGA TCTGCAGGGC CGCAGCATTC GTTACAACAT GCTCAAGCGC GACGTCGACA CGAACCGTCA GCTCTACGAT GCGCTTCTTC AACGCTATAA AGAAATCGGT GTTGCAGGCA ATATCGGCGC CAACAACGTG ACCATCGTCG ATACCGCAGA TGTGCCTACG TCGAAGACTT CGCCGAAACT GAAATTGAAC CTCGCATTGG GACTCATCTT TGGCGTATTC CTAGGTTTGG CTGTGGCTCT GGTGCGGTAC TTCCTGCGCG TCAATGGGCA GGAAACGCGG TTCAACTGA
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Protein sequence | MNSDNRPSSS HRHWHLELAD VGLLDYWRAL VSQRWLIFGI ALAGLLLALV ITLLMPEKYR ATSTLQIERD SLNVVNVDNL MPVESPQDRD FYQTQYQLLQ SRSLARAVIR EAKLDKEPAF KDQVDEALEK AAAKNPEAGK SVDSRQAIIE RSLTDTLLDG LVVEPILNSR LVYVHYDSQD PVLSAKIANT YAKMFIISTQ ERRMKASSFA TTFLAERLEQ LRGKVEDSEK SLVAYSTDEQ IVSVGDDKPS LPAQNLTDLN ALLASAQDVR IKAEAAWRQA ESGDVMSLPQ VLSSPLIQSL RAQQVQLTSE YQQKLSTFKP DYPEMQRLNA QIEESRRQIN GEVINVRQSL KATYDASVHQ EQLLNERIAG LRNNELDLQG RSIRYNMLKR DVDTNRQLYD ALLQRYKEIG VAGNIGANNV TIVDTADVPT SKTSPKLKLN LALGLIFGVF LGLAVALVRY FLRVNGQETR FN
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