| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01278 |
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| Symbol | |
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| ID | 6307039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3621034 |
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| End bp | 3623391 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642640786 |
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| Product | Putative signal protein with HAMP, GGDEF and EAL domains |
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| Protein accession | YP_001914635 |
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| Protein GI | 188577706 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0804794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCTGC ATACCCGCAT CGCGGCCTTG CTGGTGCTGG TCGTGCTTGC CACACAGGCG
CTCACATTTT TTGCCGTGCA GGTGGCCACC GAGCGCAGCG TCAAGGCGCA GCTGGGCGAA
GAGCTGGAAA TCGGGCAGGG GGTCTGGCAA CGCATCAACG TGCGCCGCGA CGAGCAGTTG
CTGCAGTCGG CGTTGGTGCT GGCCGACGAT TTCGGGTTCC GTGCGGCCGT CGCCAGCGGC
GATGTGCCGA CGATGCAATC GGCCTTGCGC AACCACGCCG CGCGCATGTC GGCGCAAACC
GCGTTATTGC TCTCGCCGGA TGGCGAATTC TTGACCGGCC TGGCTGACGT GCCGCAAGCC
GAACAACTGC GTGCGGTGCA GGCATTGCTG CAACAGGCGC AGCGCGATGG ACGCGCAGTG
GGTGTGGTGG CGCTGGATCA GCGCATCGTG CGCTTGGCGG TAGTGCAGGT ACTGGCGCCG
AACCGGGTCG GCTGGATCGG GATCGGCAAC GAATCCGGCG ACGGCCTGGC GCAGGATTTC
CGCAGCACCA CCGGGCTGGA TGCCACCTTC TTCACCGATG GCCCGCCGCT GCGCGTGCTG
GCCTCCACGA TGGCGCCATC GGCGCGCGCC GAATTTGCGC AACAACTGGC CGCGGCGAAG
AAGCTGCCGG CTGTATCGAT CCCGTTGACG TTGGGCCAGT CGCGCTATCT GGTCAGGCTG
CAAGCGATCC AAGGCGACAG CCACATGCGG GTCGCGTTGC AGGCATCGCT GGATCGCGTT
GTCGCGCCGT ATCGCGTTCT CAAGCTGCGC ATCCTGCTGC TGGCCGGGTT AGCCACTGTT
GCCGCACTGG TTGTGGCGAT TTTTCTCGCA CGCAGCGTGA GCAAACCAGT CGCACAACTG
GTACAGGCCG CGCGGCGCAT CCAGCGCGGC GATTACTACA CCGCCGTGCA GGTGCCGCCT
GGCCGCGAAC TTGCCGAGCT GGCCGACAGT TTCGGGCGCA TGCAGCACCA GATCGCCAGC
CGCGAGCAGC ACATCCTGCA TCAGGCCCGC CACGACGCCT TGACCGGCCT GCCCAACCGG
ATCTGGTTGC TGGAGCGGTT GAAGGAGGTG GTGGAGCAGA CCGTGGCAGC CGGAGGCACC
GCCGCGGTGC TGATCCTGGA TCTGGAGCGT TTCAAGGAAC TTAACGACAG CCTGGGCCAC
GACTTCGCCG ACCAGGTGTT GGTGGAGGCC GGTCGCCGGT TGGTGGAGGT CGTGCAGGAG
CCCAATCTAG TCGGTCGGCT GGGCAGCGAT GAATTCATGG TGGTGGTGGC GCAAGCCGAT
GCGGTCAGCG TGCAGCAGGA TGCGCAGCGC CTGCTGCTGC AGCTGCGTCG CCCGCTGGTA
TTGCCGCAGG CGCGTATTCA GCTCGAAGCT AGCATCGGCA TCGCGCTGAT TCCCGAGCAT
GGCGCCGATC CGGATACCTT GTTGCGCCGC GCCGATATCG CGCGCCGCCA AGTCGGCACC
ACAAGCGCCA TTGGCGCCAG CGTCTATCGC CTGGGCCAGG ACGAACAGCA TCTGCGGCGT
TTGCGTCTCA CTGGCGATCT GCGTCAGGCC ATTGGCGCAA ACGAACTCAC CTTGCGCTTC
CAACCCAAGA TCTGTCTGCG CAGCGATCAG GTCGAGCAGG TCGAAGTACT GGTGCGCTGG
CATCACCCGG TGCTCGGCCC GATCGGCCCG GACGAATTCA TTCCGCTGGC CGAGCACGCC
GGCGTGATCC ACCCACTCAC CCGCTTCGTG CTGGACGAAG CGCTGCGCTG CCAGGCGCAA
TGGCGCGAGC AAGGGCTAGT GCTCGGCATG GCAATCAATT TGTCCGCGCT CGACCTGTCC
GATCCCGGCT TGCCCGACTT CGTGCGCGGC CGTCTGGAGC ATCACGCCGT GCCGGCGCAG
TCGGTCACGC TGGAATTGAC CGAAAGCGCC TTGATGCGCG ATGTCGAATT CGCGCTGCAC
ATGCTGCATC AGTTACGCGG CGTGGGCGTA CGTCTGTCCA TCGACGACTT CGGTACCGGC
TATTCCTCGT TGGCCCAACT CAAGCGCATG CCGGTGAACG AATTGAAGAT CGACAAGAGT
TTCGTCATGC AGTTGGCCGA AGGCACCGAC GATGCCTTCA TTGTCCGCAG CACGATCGAT
CTAGGGCACA ACCTGGGCCT GAGCGTCATC GCTGAAGGCG TCGAGAACGC CACCGCGCTG
GCGCTGTTGC GCGGTTACGG CTGCGACATG GTGCAGGGCT ATCTGTATTC GCCACCGCTG
GAAGAGGCGC CGCTGGTGGC CTGGTGCATG CGCCAACTCG GCATGACCTC GGCGGCGCAC
GCAGGTGTGC AGCGATGA
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| Protein sequence | MRLHTRIAAL LVLVVLATQA LTFFAVQVAT ERSVKAQLGE ELEIGQGVWQ RINVRRDEQL
LQSALVLADD FGFRAAVASG DVPTMQSALR NHAARMSAQT ALLLSPDGEF LTGLADVPQA
EQLRAVQALL QQAQRDGRAV GVVALDQRIV RLAVVQVLAP NRVGWIGIGN ESGDGLAQDF
RSTTGLDATF FTDGPPLRVL ASTMAPSARA EFAQQLAAAK KLPAVSIPLT LGQSRYLVRL
QAIQGDSHMR VALQASLDRV VAPYRVLKLR ILLLAGLATV AALVVAIFLA RSVSKPVAQL
VQAARRIQRG DYYTAVQVPP GRELAELADS FGRMQHQIAS REQHILHQAR HDALTGLPNR
IWLLERLKEV VEQTVAAGGT AAVLILDLER FKELNDSLGH DFADQVLVEA GRRLVEVVQE
PNLVGRLGSD EFMVVVAQAD AVSVQQDAQR LLLQLRRPLV LPQARIQLEA SIGIALIPEH
GADPDTLLRR ADIARRQVGT TSAIGASVYR LGQDEQHLRR LRLTGDLRQA IGANELTLRF
QPKICLRSDQ VEQVEVLVRW HHPVLGPIGP DEFIPLAEHA GVIHPLTRFV LDEALRCQAQ
WREQGLVLGM AINLSALDLS DPGLPDFVRG RLEHHAVPAQ SVTLELTESA LMRDVEFALH
MLHQLRGVGV RLSIDDFGTG YSSLAQLKRM PVNELKIDKS FVMQLAEGTD DAFIVRSTID
LGHNLGLSVI AEGVENATAL ALLRGYGCDM VQGYLYSPPL EEAPLVAWCM RQLGMTSAAH
AGVQR
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