| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01232 |
|---|
| Symbol | metH |
|---|
| ID | 6306377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 2943825 |
|---|
| End bp | 2946578 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642640133 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_001913990 |
|---|
| Protein GI | 188577061 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0491653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTC CCCGCTACAC CCGTCTGTCC GGCCTTGAGC CGTTGGTCAT TACGCCAGAC
CTGTTATTCG TCAACGTCGG CGAGCGCACC AACGTCACCG GCAGTGCGCA ATTTCGCAAG
CTGATCAAGG AAGAACGCTA CGAGGAAGCG GTGGAGGTCG CACGTCAGCA GGTGGACAGC
GGCGCGCAGA TCCTCGACGT CAACATGGAC GAGGGCCTGA TCGATTCGGA AAAAGCCATG
ACGCGCTTTC TCAATCTGAT CATGTCCGAA CCGGATATCG CACGCATTCC GGTGATGGTG
GATTCGTCCA AGTGGAGCGT GATCGAAGCC GGATTGAAAT GCCTGCAAGG CAAGAGCGTG
GTGAACTCCA TCTCGCTCAA GGAAGGCGAA GCGGTGTTCG TCGAACACGC GCGCAAGGTG
CTGCGCTACG GTGCCGCCGC GGTGGTCATG GCCTTCGACG AAGCGGGCCA GGCCGACACC
TGCGCACGCA AGGTCGAGAT TTGCACGCGC GCCTACAAGG TGCTCACCGA GCAAGTGGGT
TTTCCGCCGG AAGACATCAT CTTCGACCCG AACATCTTTG CCGTGGCCAC CGGCATCGAG
GAACACGACA ACTATGCGGT GGACTTCATC GAAGCCACCC GTCTCGTCAA GAACACGCTG
CCGCATTGCC ATGTGTCCGG CGGCGTTTCC AACGTGTCGT TTTCGTTTCG TGGCAACGAA
ACAGTACGCC AGGCGATCCA CTCGGTGTTC CTGTTCCATG CGATCAAGGC TGGCATGGAC
ATGGGCATCG TCAACGCCGG CGGCATGCCG ATCTATGACG AGCTGGATCC GGAATTGCGC
GAACGCGTGG AAGACGTGAT CCTCAACCGA CGCAAGGACG GCACCGAGCG CCTGCTGGAA
ATCGCCGAGC GCTACAAGGG CACCAAAGGC GCGGCGAGAG TTGAAGACCT GGCCTGGCGC
GACAAACCGG TCCGCGCGCG CTTGGCGCAT GCGCTGGTGC ACGGCATCGA CGCATTTGTG
GAAACCGATA CCGAAGAAGC GCGCCAGCAA TCCACACGCC CACTGGACGT GATCGAAGGT
CCATTAATGG ACGGCATGAA CGTGGTCGGC GATCTGTTCG GCGCCGGCAA GATGTTCCTG
CCGCAGGTGG TCAAATCCGC GCGCGTGATG AAAAAAGCGG TGGCGTACCT GCTGCCGTAC
ATCGAAGCGG AAAAATTGCG TACCGGCGAT AGCGGCAAGT CCAACGGCAA GATCATCATG
GCCACCGTCA AGGGCGATGT GCACGACATC GGCAAGAACA TCGTCGGCGT GGTGTTGGCG
TGCAACAACT TCGATGTCGT GGATCTGGGC GTGATGGTGT CGGCGCAGCT GATCCTTGAC
CGTGCGCGCG AAGAGAATGC AGACCTGATC GGCTTGTCCG GCTTGATCAC GCCCTCGCTG
GAAGAGATGT CGCACGTCGC ACGCGAGATG CAGCGACAAG GCTTCGACAT TCCGTTGTTG
ATTGGCGGCG CCACCACCTC ACGCGCGCAC ACGGCATTGA AGATCGACCC GCACTACAGC
GCGCCCACGG TCTGGGTGAA GGATGCCTCG CGGGCGGTGG GCGTGGCGCA ATCGCTGATT
TCGCGCGACC TGCGCCAGGC CTTCGTTACC GCCAACGATG CGGATTACGC GGAAATCCGC
GCACGCCACC GCAACCGCGG CGATGCCAAG CGCTTGGTGT CGCTGGAAAA AGCCCGTGCG
CAGCGCTTCG ATGGCGACTG GGACACCTAC ACGCCGCCTG CCCCGCGACA GCCGGGCATC
CACGTGTTCG ATGACTACCC GCTGCAGGAG CTCATCGACC TTATCGACTG GACGCCATTC
TTCCAGGCCT GGGAGCTGGC CGGTAAATTC CCGGCAATCC TCAGCGACGA GATCGTCGGC
ATCCAGGCCA GCGAGCTGTA TCGCGACGCA CGCCGCATGC TCAAGCGCAT CGTCGACGAA
AAGTGGCTCA CGGCCAAGGC CGTGTTCGGG CTATGGCCGG CGAACAGTGT CGGAGATGAT
GTCGTCGTCC TGACCGAACC GGCGGAATCG GGAGTCAGGA ATCGGGAATC GCCAAGCGAT
GCCCCCGCGC TCGACCATTC CCGATTCTCC ATTCCCCATT CCTTGCATTT TTTGCGCCAG
CAAGTCGACA AACCCGTCGA CCGCCCCGAC TTCTGCCTGG CCGATTTCAT CGCGCCGAAA
AGCAGCGGCA AACGGGACTG GATCGGTGCA TTCGCGGTCA CTGCAGGCAT CGGCATCGAC
CCGCATGTGG CCCGTTTCGA AGCCGCGCAC GACGACTACA ACTCCATCCT GCTCAAGGCG
TTGGCCGACC GTCTGGCCGA AGCATTGGCC GAGCGCCTGC ATCAACGCGT GCGTACCGAA
TTCTGGGCCT ATGTCGACGA CGAAACACTC GACAACGAAG CCCTGATCGC CGAGCGCTAT
CGCGGCATTC GCCCGGCTCC CGGCTACCCG GCCTGCCCGG AACACAGCGA AAAACGCACC
TTGTTCGATC TGCTCGATGC AGAGCGCAAC GCCGACATGT CGCTGACCGA AAGTTTCGCG
ATGCTGCCCA CCGCCGCGGT CTCCGGCTAT TACTTCAGCC ATCCCAAAAG CCAGTACTTC
GTGGTCGGGC GACTGGGCAA GGAACAGGTG GCCGATTACG CAAAGCGCAA GGGCATCACG
CTGGCATTGG CCGAACGGCA TCTAGCGTCC AACCTGGATT ACGACCCGGA ATAA
|
|---|
| Protein sequence | MSTPRYTRLS GLEPLVITPD LLFVNVGERT NVTGSAQFRK LIKEERYEEA VEVARQQVDS
GAQILDVNMD EGLIDSEKAM TRFLNLIMSE PDIARIPVMV DSSKWSVIEA GLKCLQGKSV
VNSISLKEGE AVFVEHARKV LRYGAAAVVM AFDEAGQADT CARKVEICTR AYKVLTEQVG
FPPEDIIFDP NIFAVATGIE EHDNYAVDFI EATRLVKNTL PHCHVSGGVS NVSFSFRGNE
TVRQAIHSVF LFHAIKAGMD MGIVNAGGMP IYDELDPELR ERVEDVILNR RKDGTERLLE
IAERYKGTKG AARVEDLAWR DKPVRARLAH ALVHGIDAFV ETDTEEARQQ STRPLDVIEG
PLMDGMNVVG DLFGAGKMFL PQVVKSARVM KKAVAYLLPY IEAEKLRTGD SGKSNGKIIM
ATVKGDVHDI GKNIVGVVLA CNNFDVVDLG VMVSAQLILD RAREENADLI GLSGLITPSL
EEMSHVAREM QRQGFDIPLL IGGATTSRAH TALKIDPHYS APTVWVKDAS RAVGVAQSLI
SRDLRQAFVT ANDADYAEIR ARHRNRGDAK RLVSLEKARA QRFDGDWDTY TPPAPRQPGI
HVFDDYPLQE LIDLIDWTPF FQAWELAGKF PAILSDEIVG IQASELYRDA RRMLKRIVDE
KWLTAKAVFG LWPANSVGDD VVVLTEPAES GVRNRESPSD APALDHSRFS IPHSLHFLRQ
QVDKPVDRPD FCLADFIAPK SSGKRDWIGA FAVTAGIGID PHVARFEAAH DDYNSILLKA
LADRLAEALA ERLHQRVRTE FWAYVDDETL DNEALIAERY RGIRPAPGYP ACPEHSEKRT
LFDLLDAERN ADMSLTESFA MLPTAAVSGY YFSHPKSQYF VVGRLGKEQV ADYAKRKGIT
LALAERHLAS NLDYDPE
|
|---|
| |