Gene PXO_01172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_01172 
Symbol 
ID6306437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand+ 
Start bp3002659 
End bp3003321 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content66% 
IMG OID642640193 
ProductHNH endonuclease family protein 
Protein accessionYP_001914050 
Protein GI188577121 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.572297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATCTTCC CCGGAGGCAA CGCTGCCCCG GACGCGGGCA GCGTTGTCGC TGCGATCCAC 
CAACTTCCCA CGCTTCGCCT GCTGTCGCTC GATGCGCACG GCCGCGTGCT GGACTGGATC 
AACTGGCAAG ACGCTGCCTG TCTGTACGCG CGCGATGCGG TGTCGTGGAC GCTGGGCGAA 
CCCTGCATGC AGATCCACGG CGGCATCTCG CGCTTGACAG GCGAGCGCAG CACGCTGGAA 
TTGCACCCCA TCATCGCCGC ACGTGGGCAT GCCCGTTCGC GCGCGCTGGA TCCCACCCCC 
ACTCTCAGCA ACACCGCCCT GTTCGCACGC GATGCGCAGC TGTGCATGTA CTGCGGCCAG 
CATTTCAGCC GCCCGCACCT GACCCGCGAT CACGTCATGC CGGTCTCCAA GGGCGGCCGC 
GACAGTTGGG AAAACGTGGT CACCGCCTGC TTCCAGTGCA ACTCGCGCAA GGCCAACCGT 
ACTCCACAAC AAGCGCATAT GCCGCTGCTG GCAGTGCCGT ACCGGCCGAG CTGGATCGAG 
CATCTGATCC TGTCCAACCG CAACATCCTG TCCGACCAGA TGGCGTTCTT GCGCGCGCAG 
CTACCCAAGC GCTCCAAGCT GTCGCTGCAG GCAGGCGCGC CACGCGTGGC GGATCCTGGC 
TGA
 
Protein sequence
MIFPGGNAAP DAGSVVAAIH QLPTLRLLSL DAHGRVLDWI NWQDAACLYA RDAVSWTLGE 
PCMQIHGGIS RLTGERSTLE LHPIIAARGH ARSRALDPTP TLSNTALFAR DAQLCMYCGQ 
HFSRPHLTRD HVMPVSKGGR DSWENVVTAC FQCNSRKANR TPQQAHMPLL AVPYRPSWIE 
HLILSNRNIL SDQMAFLRAQ LPKRSKLSLQ AGAPRVADPG