| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00602 |
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| Symbol | sdhA |
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| ID | 6305792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2324838 |
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| End bp | 2326628 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642639558 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001913422 |
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| Protein GI | 188576493 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCTT ACAAGATCAC AGAACACAAG TACGACATGG TCGTGGTGGG CGCCGGCGGC
GCTGGCCTGC GTGCCACGTT CGGCCTGGCC CAGAAGGGCC TGCAGACGGT CTGCCTGACC
AAGGTCTTCC CGACCCGTTC GCACACCGTG GCAGCGCAGG GCGGCATTTC CGCAGCGTTG
GGCAACATGG GCGAAGACGA CTGGCGTTAT CACTTCTACG ACACCATCAA GGGCTCCGAT
TGGCTGGGCG ACCAGGACGC GATCGAGTAC ATGTGCCGCG AAGCGATTCC GGCCATCATC
GAACTCGAAC ACTACGGCGT GCCGTTCTCG CGTACCGAAG ACGGCAAAAT CTACCAGCGC
CCGTTCGGCG GCATGACCAC CAAGTACGGC GAGGGCCCGT CCGCGCAGCG CACTTGCGCC
GCAGCCGACC GGACTGGCCA CGCGATGCTG CACACGCTCT ACCAGCAGTC GCTGGCGCAC
AACGCACGCT TCATGATCGA GTACTTCGCA CTCGATCTGA TCTTCGACGA AGAAGGTGTC
TGCCGCGGCG TACTCGCACT GGATATGGCC GAAGGCTCGC TGCATCTGTT CCGCGCCCAC
GGCGTGGTGC TGGCGACCGG CGGTTACGGC CGCGCCTACT TCAGCGCGAC CTCCGCGCAC
ACCTGTACCG GTGATGGCGG TGGTTTGGTG ATGCGTGCCG GCCTGCCGGT GCAGGACATG
GAGTTCGTGC AGTTCCATCC TACCGGTATC TACGGTGCGG GCTGTCTGAT TACCGAAGGC
GTGCGCGGCG AAGGCGGCAT TCTGCGCAAC AGCAACGGCG AGCGCTTCAT GGAGCGCTAC
GCACCGCATT ACAAGGATCT GGCGTCGCGC GACGTGGTGT CGCGCTCGAT GACGGTCGAA
ATCCGCGAAG GCCGTGGCGT GGGCGAGCAC AAGGATCACA TCCTGCTCGA CCTGACGCAC
CTCGGCCCGG AAGTCATCAA CGAAAAGCTG CCCGGCATTG CCGAAAGCGC GCACATCTTT
GCCGGTGTTG ACGTGACCAA GCAGCCGATT CCGGTGCTGC CGACCGTGCA CTACAACATG
GGCGGCATTC CCACCAACTT CTACGGCGAA GTCGTGCGCA ATCAGGGCGA CGATCCTGAT
GCAGTGGTGC CGGGCCTGTA CGCCATTGGC GAAGCGGCGT GCGTGTCCGT GCACGGTGCA
AATCGTCTGG GTTCGAATTC GCTGCTGGAT CTGGTGGTGT TCGGTCGTGC GGTGGCCAAC
CGCTGCGCCG AGACGGTCAA GCCCAATCAG CCGCACAAGA CCTTGCCGTC GTATGCCTGC
GACAAGGCGC TGGGCCTGCT GGACAAGTTG CGTCACGCCA ACGGCTCCAC GCCGACCTCG
GTGATCCGTG ACAACATGCA GCGCACCATG CAGTCCGACG CTGCCGTGTT CCGCACCAGC
AAGACGCTGA AGGAGGGCGT TGACAAGATG GCCGAGATCT TCGCCACCTT CGAAGACGTC
AAGGTGTCGG ACCGCTCGCT GGTGTGGAAC TCGGACCTGA TCGAGACCTA CGAGTTGAAC
AACCTGCTGC TCAACGCAGT GGCGACGATC AATTCGGCCG AACAGCGCAA GGAAAGCCGC
GGCGCGCATT CGCACGAAGA CTTCCCGGAC CGCGACGACG TCAACTGGCA GAAGCACACG
CTGGTGACCG TCGACGACAA GGGCAAGTGC GAGTTCGATT ACCGTCCTGT GCATATGTAT
ACGCTGAGCA AGGATGTGGA CGTGGTCCCG CCGAAGCCGC GCGTTTACTG A
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| Protein sequence | MSAYKITEHK YDMVVVGAGG AGLRATFGLA QKGLQTVCLT KVFPTRSHTV AAQGGISAAL
GNMGEDDWRY HFYDTIKGSD WLGDQDAIEY MCREAIPAII ELEHYGVPFS RTEDGKIYQR
PFGGMTTKYG EGPSAQRTCA AADRTGHAML HTLYQQSLAH NARFMIEYFA LDLIFDEEGV
CRGVLALDMA EGSLHLFRAH GVVLATGGYG RAYFSATSAH TCTGDGGGLV MRAGLPVQDM
EFVQFHPTGI YGAGCLITEG VRGEGGILRN SNGERFMERY APHYKDLASR DVVSRSMTVE
IREGRGVGEH KDHILLDLTH LGPEVINEKL PGIAESAHIF AGVDVTKQPI PVLPTVHYNM
GGIPTNFYGE VVRNQGDDPD AVVPGLYAIG EAACVSVHGA NRLGSNSLLD LVVFGRAVAN
RCAETVKPNQ PHKTLPSYAC DKALGLLDKL RHANGSTPTS VIRDNMQRTM QSDAAVFRTS
KTLKEGVDKM AEIFATFEDV KVSDRSLVWN SDLIETYELN NLLLNAVATI NSAEQRKESR
GAHSHEDFPD RDDVNWQKHT LVTVDDKGKC EFDYRPVHMY TLSKDVDVVP PKPRVY
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