| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00458 |
|---|
| Symbol | |
|---|
| ID | 6305397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 1942935 |
|---|
| End bp | 1944194 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642639166 |
|---|
| Product | ATP-binding component of putrescine transport system |
|---|
| Protein accession | YP_001913039 |
|---|
| Protein GI | 188576110 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0033874 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGAGTT CGATGGCATC CACCGAGACC ACGCCGCAGC CGCATGTTGC CCCTTACGAC
AGCGGTTATC TCAGCATTAG CGAGGTCCGC AAGGAGTTCG ATGGATTCGT TGCCGTGGAC
GCTGTCAGCC TGCAGATCCG CAAGGGCGAA ATGTTCGCGT TGCTGGGAGG CTCGGGCAGT
GGCAAATCCA CGCTGCTGCG TTGTCTTGCG GGGTTCGACC GGCCAAGCAG TGGGCGCATC
GTTCTGGACG GTCAGCCCAT CGATGCGCTG CCGCCGTACG AACGCCCGAT CAATATGATG
TTCCAGTCGT ATGCGCTGTT TCCGCATATG AGCGTGGAGC AGAACATCGC CTTCGGCCTG
AAACAGGAAG GCTTGTCCAA GGCTGCGATC GCCGCCCGTG TCGGCGAGAT GCTCGAGCTG
GTGCAGCTTG GCGCGCTGGC CAAGCGCAAG CCGCATCTGC TCTCCGGCGG GCAGCAGCAA
CGCGTGGCCC TGGCGCGCTC GCTGGCCAAG CGGCCCAAGC TGTTGTTGCT GGACGAACCG
ATGGGCGCGC TGGACAAGAA GCTGCGCTCG CAGATGCAGC TGGAGCTGGT CAACATCATC
GAAACCTCCG GCGTCACCTG CGTCATGGTG ACCCACGATC AGGAAGAGGC CATGACGATG
GCCACCCGCA TCGCGCTGAT GGACCAGGGC TGGATTCAAC AAGTCGGCAC GCCCGACGAA
ATCTACGAGC AGCCGGCGAA TCGCTTTGCG GCCGAGTTCA TCGGCTCGGT CAATCTGATC
GATGCGGTCA TCGCCGACGA CGCGCCCGGT TACGTCGGCT TGAAGACCTC TGCGTTCGAT
GCCTGCATCC GCATCGGTCA CGGCATCACC GGCTTCGAAG GGCAGGCGGT GGCGTTCGCG
CTGCGCCCGG AAAAGCTCGC CATCGGCAAG GACGAGCCGA CGCAGGCGTG CAACAAGGCG
CAGGGCGTGA TCGAGGACAT CGCCTATTTC GGCAGCCATT CGGTGTATCA CGTGCGCCTG
CCCAGCGGGA TCAAGATGAT GGCCAACTTC GCCAATCGCC AGCGCTGGGC CAGCGAAGCG
CTGACCTGGG GCGACACCGT GTGGGTGGGC TGGGGCGAAG ACGACGGCGT GGTGCTCACC
GTTATACACG CCAATCGCCG CCTACATCGG CATCGTGTAC TGCTATTTGC CGTTCATGGT
GTTGCCGCTG TACGCCAACC TGGTCAAGCA CGACAACCGT CTGCTCGAAG CCGCCTATGA
|
|---|
| Protein sequence | MRSSMASTET TPQPHVAPYD SGYLSISEVR KEFDGFVAVD AVSLQIRKGE MFALLGGSGS
GKSTLLRCLA GFDRPSSGRI VLDGQPIDAL PPYERPINMM FQSYALFPHM SVEQNIAFGL
KQEGLSKAAI AARVGEMLEL VQLGALAKRK PHLLSGGQQQ RVALARSLAK RPKLLLLDEP
MGALDKKLRS QMQLELVNII ETSGVTCVMV THDQEEAMTM ATRIALMDQG WIQQVGTPDE
IYEQPANRFA AEFIGSVNLI DAVIADDAPG YVGLKTSAFD ACIRIGHGIT GFEGQAVAFA
LRPEKLAIGK DEPTQACNKA QGVIEDIAYF GSHSVYHVRL PSGIKMMANF ANRQRWASEA
LTWGDTVWVG WGEDDGVVLT VIHANRRLHR HRVLLFAVHG VAAVRQPGQA RQPSARSRL
|
|---|
| |