| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00056 |
|---|
| Symbol | |
|---|
| ID | 6305294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1808369 |
|---|
| End bp | 1808953 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642639065 |
|---|
| Product | chemoreceptor glutamine deamidase CheD |
|---|
| Protein accession | YP_001912938 |
|---|
| Protein GI | 188576009 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00180609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGTCG ACGACGTCAT GCGCTACCGC GATTCGCGGT TTCAGACCAT CGCCGCCAAG
CTGCTGCCCA CCCAGTATCT GGTGGTGGAC GACGACACCG CGTTGACAAC CACGCTGGGA
TCATGCGTTG CAGCCTGCCT GCGCGATCCG GTGCTCAAGA TCGGCGGCAT GAACCATTTT
TTGTTGCCAG AAGGCCAGAT CGGTGATGGC GCACCCGCGC GTTACGGCAG TTACGCGATG
GAGTTGCTGA TCAACGACAT GCTCAAGCGC GGCGCGCATC GCAAACGCAT CGAGGCCAAG
GTCTTCGGTG GCGCCAACGT GCTCAAGGGC TTCACCAGCA ACCCGGTCGG CACGCGCAAT
GCAGAATTCG TGCGCCAGTA CCTGCAGGCC GAACACATTC CCATCATTGC CGAAGATCTG
TGCGGCATCC ATCCGCGCAA GGTGTGGTTC TTCGCGACGA CCGGTCGCGT CGCCGTGCAG
CGTCTGCCGC ATGCACACGA AGCCGAAGTC GCCGCGACCG AATCGGCCGT GCGTGCCCGT
CTGTCCAAAG CACCGGTCAC CGGTGGAGTG GAGTTGTTCG AATGA
|
|---|
| Protein sequence | MQVDDVMRYR DSRFQTIAAK LLPTQYLVVD DDTALTTTLG SCVAACLRDP VLKIGGMNHF
LLPEGQIGDG APARYGSYAM ELLINDMLKR GAHRKRIEAK VFGGANVLKG FTSNPVGTRN
AEFVRQYLQA EHIPIIAEDL CGIHPRKVWF FATTGRVAVQ RLPHAHEAEV AATESAVRAR
LSKAPVTGGV ELFE
|
|---|
| |