| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_B0076 |
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| Symbol | trbC |
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| ID | 1187454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004632 |
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| Strand | + |
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| Start bp | 64618 |
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| End bp | 66906 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637408335 |
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| Product | trbC protein |
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| Protein accession | NP_808661 |
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| Protein GI | 29171615 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCCCA ATGACTACGC CGTCGAGCGC ACGCGCCTAA ATCGGCGGGT TTACCACTCG
GCACTGGCTG AGTGGTTGAT GGGCCCCGGT AGTCTGACGC TGGGCCTTGC CGGGTCTGTG
GTGGGAGGCG TCCTGTACCC GGTCAGCCTG TGGCTCAGTC TGCCGGCCTT GCTGGTTTGG
TCACCTGTCA TGCTGCTCGA ACCCTGGCAG ATGCCCATGC GCATGCCTTC AGACATGGAC
TGCCTCGACC CTTCGACGCA ACGCCAGGTG ACGGGCAAGC TGCTGGGTTT CTTGCCGGTC
ACGGCCATGC GCACGGTGAT GCTCAAGGCA GCGGGCATCC TGTATATGGG GTACCTGCGC
GGTCGGGACG CCGGGCGTGA ACTGTGGCTG TCGCTGGATG ACATGACCCG CCATATTCTG
ATGTTCGGTA CAACCGGTGC CGGCAAAACC GAAGCACTGC TGGGGTACGT GTTGGGCCAG
CTGGGCTATG GAAAGGGCCT GATTTATTCG GACGGCAAGG CCCAAAATGA TGTGGCCGCC
GCGATCGTGT CGCTGGCCCG ACGCTTTGGC CGTGAAGACG ACGTTCGGAT GATGAACTTC
ATTACCGGGG GCCGCTCCAG GGCACAGGAA CTGCTGGAGG ACAACAAAAG CAGAGGGCAG
ACCAATACCG TCAACGCGTT CGGTATTGCT CAGGAAACCT ACATCATCAA CCTGATGGAT
TCGATGTTGC CTCCTGCGGG CAACGATGCC GGCTGGCAAG AGAAAGCCCG GGCCATGATT
CAGGCTTTGG TGTTCTCCCT GGTGTACAAG TGCCGGCGTG AAGGCACGGT CATGTCCCAG
CGCACGATCC AGGCACATTT GCCGTTGCGG GCCATTGCCA AGCTCTACAT CCAGTCGGTG
GAACAGCAAT GGCATGAAGA CGCCCAGTTA CCCCTGAAAA ACTACCTGGG CACATTGTCC
GGTTTTGACC TGGCCAAGGT GGATTCGCCG GAGGAATGGG CGACCACTGC GTTGGATCAG
CATGGTTTTC TGATCCAGCA GTTCACCCGC ATGCTGGCCT TGTTCAATGA CACCTACGGC
CATGTGTTTG CCCGTGACGC CGGCGACATA GACCTCAAGG ACGTGGTGCA TAACGATCGC
ATCCTGGTGG TCCTGATTCC TGCGCTGGAA ATCTCCTCGA CCGAGGCCGC GACCCTTGGG
CGTCTGTACG TGTCGCAATT GGCCATGATC CTGAGCCAGG ATCTGGGGGA GAAACTGGAG
GGCAAACCCG AAGACATCCT GGTGATCCGC AAGTACAAGG ACCGCTTTCC GTTCTTGTGG
ATCTGCGACG AGGTCGGGGC CTACTACACC GAAAAGCTCG GCGAGCTGGC CACGCAAGTA
CGCTCCCTGG GGTTTTGCCT GCTCCTGGCC AGTCAGGAGG CGCAGCGCCT CAAGTCGGCG
GCCGGCGACA AGGTGTGGAC GCTGATCGGG AACATGGGGG TCCGAATCAC CGGCAAGATC
ATGGACCCCA AGGACACTCT CGAAATACTG CAGTTGATGG CCGGTACCGA GTACCTGCCA
GTGATGAGCG GTATGGTGCG TCAGGCCGGA ATCATGGGGG CCAGCTGGGA GGAAGCAGAC
ACACTGAGCC TGAAAGATGA GAAGAAAGTC AGCGTCGAGG AAGTGCAGCA GCTCAAGGAG
GGGGAAAACA TCACGCTGTT CAACGGACAA GTGATTCGCG GCAGCTCCTT GTACATTCAC
GATGCTGACA AGCTGTCCAA GGAAGCGATC CGGATCAACC GCTTCATCGA GGTGGCCCCG
CCAGCGCTGG ACACCTTGTT GGCCGGTGCG CCTGCCCGCA TTCGGCGCAG CTATCCGCGC
GCGGACCGCG TGCAGCAGAT CCTGTACCAC CTGGCGATGA AGCCTGGCCG TTCAGACCTT
GAAAACCTGG TGCTGACAGA TCCGACGTTG GTCGTCTTGA ACGAGCTGGG AGAAGAGTGG
CGGCTGATCT GGCGTCGCCG TCCTGGAGCG GCAGTGCGCA GCACCTTGTT ATGGCACACA
GCGCTGGAGC ATGTGCCCAA GCGCGGAAGC GGCTACGTGG CGCAATCGTC CACGGCGCTG
GATCTGACCG TCGGCAGCAA GCGGTTGCAG GCCTACCAGG CGCAGCACAT CGATCCGGCC
AGAGCGCCGA AAGTGAAGGG CAAGGCGCCT GCACCTAGAG CCACAACGCC TGTTCCACCA
CGCCACGACC ATTCACCGCC CTATTTCGAC GACGGATCGT ATTCGCCGGC GCCGTTCGAC
TGGGATTAA
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| Protein sequence | MRPNDYAVER TRLNRRVYHS ALAEWLMGPG SLTLGLAGSV VGGVLYPVSL WLSLPALLVW
SPVMLLEPWQ MPMRMPSDMD CLDPSTQRQV TGKLLGFLPV TAMRTVMLKA AGILYMGYLR
GRDAGRELWL SLDDMTRHIL MFGTTGAGKT EALLGYVLGQ LGYGKGLIYS DGKAQNDVAA
AIVSLARRFG REDDVRMMNF ITGGRSRAQE LLEDNKSRGQ TNTVNAFGIA QETYIINLMD
SMLPPAGNDA GWQEKARAMI QALVFSLVYK CRREGTVMSQ RTIQAHLPLR AIAKLYIQSV
EQQWHEDAQL PLKNYLGTLS GFDLAKVDSP EEWATTALDQ HGFLIQQFTR MLALFNDTYG
HVFARDAGDI DLKDVVHNDR ILVVLIPALE ISSTEAATLG RLYVSQLAMI LSQDLGEKLE
GKPEDILVIR KYKDRFPFLW ICDEVGAYYT EKLGELATQV RSLGFCLLLA SQEAQRLKSA
AGDKVWTLIG NMGVRITGKI MDPKDTLEIL QLMAGTEYLP VMSGMVRQAG IMGASWEEAD
TLSLKDEKKV SVEEVQQLKE GENITLFNGQ VIRGSSLYIH DADKLSKEAI RINRFIEVAP
PALDTLLAGA PARIRRSYPR ADRVQQILYH LAMKPGRSDL ENLVLTDPTL VVLNELGEEW
RLIWRRRPGA AVRSTLLWHT ALEHVPKRGS GYVAQSSTAL DLTVGSKRLQ AYQAQHIDPA
RAPKVKGKAP APRATTPVPP RHDHSPPYFD DGSYSPAPFD WD
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