| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_B0052 |
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| Symbol | |
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| ID | 1187430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004632 |
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| Strand | + |
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| Start bp | 39856 |
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| End bp | 41037 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637408312 |
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| Product | type IV pilus biogenesis protein |
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| Protein accession | NP_808638 |
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| Protein GI | 29171592 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR02525] plasmid transfer ATPase TraJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGA CGGCCCAGAC AATGGAGTTT GCCCCCTACG CTTTTGAAGA CGGGCTGAAT
GCAGACACCT TGCGCGATTT TTTCGTCTGG TGTGAACGGC AGTCAGCCAG CGACATTCAC
ATCCAGGGCG GTAACCACCT GGTGGTAGGG CATCAAGGTC GCTTGCGCCA GGCCAGCCGG
TTTGTGCTGG CTGACGATAC GTGGTCCAAG CTCCTCGATG ATCTGTTCAG CCCTGAAATC
CGGCCGACGG TACGCGGTGG TCGGCCTGTA GACCGGGCCA TACAGCTGGA TGGCGACATC
AACCAGCGCT ACGGCCTGGA GCGTGGCGAG CGATTACGCT TTCGCTGCAA CTTTGTGCAG
GCCACTGCTG GGCGACTGGA CACCACCATC GCACTGACGA TGCGGATCAT TCCATCTGAT
ATCCCGGATC TAACAAAGAT GGGGCTGGAA GAGGATCTGT TCGAAGCGTT GTTGCCGTCC
AATGGTCTAG GACTCATTGG TGGAATCACG GGGTCGGGTA AAAGTACCCA GGCGGCCGCT
ATCTACCGCT TTTGCCTGGA CACCGATCCT GACCGCAAGG TGACCACGAT CGAAGACCCG
ATCGAATTCA TTCTCGCGCG TCCAGGGGAT GTATTGGCCT CGACGCAACT GCAGATAGGT
CGAGACGTTG CCAACTATGC CGAAGGCATT CGGGCAGATC TTCGCCGGGC ACCGTCGATC
ATCGGGGTGG GTGAAATGCG GGATTTGGAA ACCTTCCAGG CGGCCGTTTT GGCCGGACAG
GTGGGCCATT TCAATCTCAG CACCTTGCAC ATCCATTCGC CTGGAGAGGC CATTCCACGG
TGCCTGACCA TGGTGCCCTC GGAAATGCGC GAGGCTACGG CCCACGATCT ACTGAGCGTT
CTGCAATACA TCATCGTGCA AAAGCTGCTG CGCACCACCG ATGGCAAGCG CCAGGCCGTG
CGCGAATACA TCATCTTCGA TGATGGGCTG CGCGCCAAGC TGGCCAGCAT GCCTTATCCC
GAATGGGGTC GGCATATCGA CTCCATTATT CGCCTGGAGC AACGACGCTT CGCTGATCAG
GCCTGGCGTC TTCATCTGGA AGGGCGCATT GACCGGCGTG AACTGGCGGT GGCCATGACC
GCCTCTCAAT TGCGAGAACT CGAACAGCGG GCCACGCCAT GA
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| Protein sequence | MTQTAQTMEF APYAFEDGLN ADTLRDFFVW CERQSASDIH IQGGNHLVVG HQGRLRQASR
FVLADDTWSK LLDDLFSPEI RPTVRGGRPV DRAIQLDGDI NQRYGLERGE RLRFRCNFVQ
ATAGRLDTTI ALTMRIIPSD IPDLTKMGLE EDLFEALLPS NGLGLIGGIT GSGKSTQAAA
IYRFCLDTDP DRKVTTIEDP IEFILARPGD VLASTQLQIG RDVANYAEGI RADLRRAPSI
IGVGEMRDLE TFQAAVLAGQ VGHFNLSTLH IHSPGEAIPR CLTMVPSEMR EATAHDLLSV
LQYIIVQKLL RTTDGKRQAV REYIIFDDGL RAKLASMPYP EWGRHIDSII RLEQRRFADQ
AWRLHLEGRI DRRELAVAMT ASQLRELEQR ATP
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