| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_B0049 |
|---|
| Symbol | |
|---|
| ID | 1187427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004632 |
|---|
| Strand | + |
|---|
| Start bp | 38100 |
|---|
| End bp | 38552 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637408309 |
|---|
| Product | pilT protein, putative |
|---|
| Protein accession | NP_808635 |
|---|
| Protein GI | 29171589 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCCT CTGCTTTCTG CTTCCAGGAG GCTGGCCAGC GCTATGGAGT TGATCCGGTG
CTACTGCAAG CGATCGGCAT ACAGGAAAGT AAACTGCAGC CTGGTGCAGT GAACCTTAAC
CGCGATTCGT CTGGAAAAGT GCTCAGCACC GACTACGGCG TCATGCAGAT CAGCACGCGC
AACGCTAACC GGCTGGTCAG GATGGGACTG ATCACGCGAG CGGAGGACCT GCTCACCAAC
GCCTGCTTTA ACGTTCAGGC GGGGGCTTGG GTACTGGCTC AACATCTTCG TGTGTGCGGC
AATACCTGGC GTTGCCTGGG TTCGTATAAC GCAGGCTTTG ACCCTTCGCA ACGCCAGGAG
CAACGGCGCC TGCATTACGC GCAGCAAGTG CGCAACGTCT ACGACCGCCT CAAAGCATTG
GGCGCTGCAC CGGCCCACCT CGCTATCCGT TAA
|
|---|
| Protein sequence | MQASAFCFQE AGQRYGVDPV LLQAIGIQES KLQPGAVNLN RDSSGKVLST DYGVMQISTR
NANRLVRMGL ITRAEDLLTN ACFNVQAGAW VLAQHLRVCG NTWRCLGSYN AGFDPSQRQE
QRRLHYAQQV RNVYDRLKAL GAAPAHLAIR
|
|---|
| |