Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_B0042 |
Symbol | |
ID | 1187420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004632 |
Strand | + |
Start bp | 33497 |
End bp | 34693 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637408302 |
Product | hydroxyglutarate oxidase |
Protein accession | NP_808628 |
Protein GI | 29171582 |
COG category | [R] General function prediction only |
COG ID | [COG0579] Predicted dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 0.711418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTACG ATTTCTGTGT GATTGGGGGT GGGATAGTGG GGCTGGCCAC AGCCATGCAA CTGCTTAGGG CGCATCCAGG CGCTTCGTTG GTACTCGTGG AAAAAGAGGC AGCGATAGCA AAGCACCAAA CTGGCCATAA CAGCGGGGTC ATCCATGCTG GGGTCTACTA CGATCCTGGC AGTTTGAAGG CCGTACTGTG CAAGCGTGGG GCAGAGCTGA CAAAAGCCTT CTGTACAGAA CACAAGATCC CGTATGAGGT TTGCGGGAAA ATGCTTGTGG CATCTAATCC TCGACAGCTT GCCTCGCTCA GCAACCTTGA AGCGCGAGCC AGACAGAATG GGCTCAACGT TGAACGACTT GAAGCTAGGG CGCTAATGCA ACGCGAACCC AATATCACAG GTCTGGGCGC ACTGTTTGTA GACAGCAGCG GTATTGTGGA TTATCGCCTC GTATCAGATG TGATGGCTGG TGTGATAGCC AAAGCCGGTG GGGAAATAGC ATTAGGTCAA ACTATAGTCG CAATTCAGGA GCATGAGAGC CATGTATCGG TGTCATCAGA AGCGCTATCC TGGAAGGCTA AAAAATTAGT GGTTTGCGCG GGTTTACAGT CTGATCGTTT AGCTGGAATG GCCGGACTGG ATGTCGATTT TCAGATTATA CCTTTTCGTG GTGAATATTT TCGCTTACCG TCAGAAAAAA ACAACAGTAT AAATCACCTG ATCTACCCAG TGCCAGAAGC AGGGCTTCCA TTTCTCGGCA TTCATCTAAC TCGTATGATT GACGGAGGGG TTACGGTTGG ACCCAATGCT GTGCTTGGTT TTTCTCGCGA GGGTTACAAA AAACATGCGT TCAATGCTCG CGATGTTTTG GAATACAGCA TGTATCCTGG CTTTTGGAAG CTTCTTGGTA AAAATTTACG CTCCGGAGTT AGCGAGATTA AAAATTCGGC CTGTAAGAAA AGCTACTTAG AACAATGCCG TCAATATTAC CCCTCTCTCA GACTTGAAGA CTTACAGCCA TCGGACGCAG GAATACGCGC GCAGGCGGTC ACAAAAAACG GAGGGTTTGT ACATGACTTT CTGTTTGTCC AAACCTCTAG AATGCTGCAC GTGTGTAATG CACCATCACC GGCAGCTACG TCGGCGATTC CCATAGCAGA AATGATAGTG GCAAAACTAG AAGGCTCTGT AGTTTAA
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Protein sequence | MIYDFCVIGG GIVGLATAMQ LLRAHPGASL VLVEKEAAIA KHQTGHNSGV IHAGVYYDPG SLKAVLCKRG AELTKAFCTE HKIPYEVCGK MLVASNPRQL ASLSNLEARA RQNGLNVERL EARALMQREP NITGLGALFV DSSGIVDYRL VSDVMAGVIA KAGGEIALGQ TIVAIQEHES HVSVSSEALS WKAKKLVVCA GLQSDRLAGM AGLDVDFQII PFRGEYFRLP SEKNNSINHL IYPVPEAGLP FLGIHLTRMI DGGVTVGPNA VLGFSREGYK KHAFNARDVL EYSMYPGFWK LLGKNLRSGV SEIKNSACKK SYLEQCRQYY PSLRLEDLQP SDAGIRAQAV TKNGGFVHDF LFVQTSRMLH VCNAPSPAAT SAIPIAEMIV AKLEGSVV
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