Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_B0001 |
Symbol | |
ID | 1187379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004632 |
Strand | + |
Start bp | 350 |
End bp | 1723 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637408267 |
Product | RepA protein, putative |
Protein accession | NP_808593 |
Protein GI | 29171547 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 0.93501 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACG ACCACGCGAT CAGTCTTGCC CGCGCGACCT CACCCACGGC CAACGCCGAT CCGCTGGCCA GCAGCACCCA CCTGCCGCCT GCCCGTTTCT TCGAAGACGG CACTGCGCTC AACCGGTTAT TGCTGGAAGC GCCGTACATG GCGCGGTGCA GTGACGACAA AACCGCGACT CGCGTCCGTC CTCGTGAATA CGCGCTGCGT TATCCCTATA TGCAGGTCAA TCGCCCCGGC ATGGTGTCTT GGCTGGTGTT CGACCTGGAC CATGCCAACG CATTAGCCTG GGACGATGCT GGGTTGCCCG CGCCTAACCT GATGGTGCGC AACCGCAAGA GCGGTCACTC CCAGCTGTTC TATGCGGTGC CGTCCGTATG CACCACTGAG AATGCACGGA CCAAGCCCAT TCAGTACATG AAAGCGATCT ATGCCGCGTT TGCCGCTCGC CTCGACGCGG ACGTGGACTA CCACGGTGGC CCTGTGGCCA AAACACCTGG CCACCCTTGG TGGGAGACGA CCGAATTTCA TAGCCACGTG TACGAACTGG GCGAACTGGC GAGCGCGGTG GAGTTGACCG TCAAACCCTG GGCCACAGGT CCCAAGCTTG ACCAGGTCAG CCATTCGCGG CACTGCATCC TGTTCGAGCA GCTGCGTTAT TTTGCGTACA GCATCGTCAA TCGCGAGCGC GAGCTGGGTT CGTTTGAGTC CTTCATGCGC TCGCTCGATG CATATGCCTA CAACCACAAC AGCTTTCTAA AGCAGGGGTT TTCGGAAAAC CTGCCGCTGT CATCGATACG TGCCACGGTC AAATCCGTAG GTCGCTGGAC GTGGGATCGG TACACCGGTG ATCGTCGCTG CCATCGAGGC GCAATGCAGC TCGATGGCAG CTTGTCGCTC ACCGAACGGC AGAGCCTGGC GGCCAAGCGC ACCAATGAGC TGCGGCACAA AGCCACAGAA TCGAAGATCC GAGCAGCGTG CAGGCAGCTT CAAGACCAGG GCAAGGCACT GGTACGTTCT GCCATTGCGA AACTCGCCGG CGTTTCGGTG AGAACGGTGG CCAGCTACAC GCACATTCTC ACTGAAGTCT CTCAACCATC CACTGTGAGT GTTCTCAGGG CTACCCGTCA GCCTGCCAAG GTTGCGACTG GGGCAGATGG CCCAGTCGAT TCAACTACCC CACAACCCGC TTCGGGCCAG GCTGCAAATC GTCGCGCTCC AGGTGTGCAA TCCGGTGTAC ATCAGATATC TGCGGTGCCG AAGGGGCCGC AAGCTGGAGA GCCGTTAAAA AAGGAACATG ACGATTGTTC ATGTATAGGA ATTTCAATAA TTCCTATACA GGGTAATCCT CCTAAAAAGG CACCCTCTGC GTGA
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Protein sequence | MSHDHAISLA RATSPTANAD PLASSTHLPP ARFFEDGTAL NRLLLEAPYM ARCSDDKTAT RVRPREYALR YPYMQVNRPG MVSWLVFDLD HANALAWDDA GLPAPNLMVR NRKSGHSQLF YAVPSVCTTE NARTKPIQYM KAIYAAFAAR LDADVDYHGG PVAKTPGHPW WETTEFHSHV YELGELASAV ELTVKPWATG PKLDQVSHSR HCILFEQLRY FAYSIVNRER ELGSFESFMR SLDAYAYNHN SFLKQGFSEN LPLSSIRATV KSVGRWTWDR YTGDRRCHRG AMQLDGSLSL TERQSLAAKR TNELRHKATE SKIRAACRQL QDQGKALVRS AIAKLAGVSV RTVASYTHIL TEVSQPSTVS VLRATRQPAK VATGADGPVD STTPQPASGQ AANRRAPGVQ SGVHQISAVP KGPQAGEPLK KEHDDCSCIG ISIIPIQGNP PKKAPSA
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