Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5612 |
Symbol | |
ID | 1187304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6394400 |
End bp | 6396088 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637396925 |
Product | inner membrane protein, 60 kDa |
Protein accession | NP_795330 |
Protein GI | 28872711 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGTT GCCCTGGCAA TCGTGACCTA CGTCGGGGTC CTGAAATGGA ACCAAGACTA TGGTCAGGCT GCCATGCCAA CCCAGAATGT TGCAGCCAGC AACACCGCAC CGGGTATTCC GGATACGGCT GCTGGTAATA ATGGTTCTGC AAGTGCCGAC GTTCCGAGCG CTACTGGCAA TACTACCAGT GCAGCGCCTC TTGAAACTCC GGCCGTAGCC AGCAAAGACC TCATCCACGT CAAGACCGAC GTGCTTGATC TGGCGATCGA CCCGGTAGGT GGTGACGTCG TTCAGCTTCG TTTGCCTCTG TACCCGCGTC GTCAGGATCG TCCTGACGTG CCTTTCCAGC TGTTCGATAA CGGCGGCGAG CGTACTTTTC TCGCACAGAG CGGCCTGACC GGGACCAATG GTCCTGATGC TCGCGCCTCC GGTCGTCCGG TTTATTCCTC CGCGCAAAAG AGTTATCAAC TGGCTGATGG CCAGGACTCG ATGGTCGTGG AGCTGAAATT CTCGGAAAAC GGCGTCAACT ACATCAAGCG CTTCACATTC AAGCGCGGTC TGTACGACCT GGTCATGACT TACGTTGTGG ATAACCAGAG CGCGCAACCC TGGGCCGGTA ATCTGTTCGC GCAATTGAAG CGTGATGCCA GCTCCGATCC TTCGTCGACC ACTGCAACCG GCACAGCCAC CTACCTGGGT GCTGCGCTCT GGACTGCGGC CGAGCCGTAC AAAAAAGTGT CGATGAAAGA TATCGACAAG GGCCAGATCA AGGAAAACGT TCAGGGCGGC TGGGTTGCAT GGCTGCAGCA CTACTTCGTG ACGGCGTGGA TTCCTGATCA TAACGTGACC AACGCCGTTC AGACCCGCAA AGACAGCCAA GGCAACTACA TCATTGGTTT CACCAGCCCG ACACTGTCGG TTGCGCCAGG CGCACAAGGC GAAACCACTG CCACGTTGTA CGCAGGTCCG AAAAGCCAGG CGGTGCTCAA AGAGTTATCC CCAGGTCTGG AGCTGACAGT CGATTACGGT TTCCTGTGGT TCATTGCCCA GCCTATCTTC TGGCTGCTGC AACACATCCA CGCGATTCTG GGCAACTGGG GCTGGTCGAT CATCGTCCTG ACCATGTTGA TCAAAGGCCT GTTCTTCCCG CTGTCCGCAG CCAGCTACAA GTCGATGGCA CGCATGCGCG CCGTGGCTCC AAAGCTTGCA GTGCTGAAGG AACAACATGG CGATGATCGT CAGAAGATGT CCCAAGCAAT GATGGAGCTG TACAAGAAAG AGAAGATCAA CCCACTGGGT GGATGCTTGC CGATTCTTGT ACAAATGCCG GTTTTCCTCT CGCTGTACTG GGTACTCCTG GAAAGCGTGG AAATGCGTCA GGCGCCGTGG ATCCTGTGGA TAACTGATCT GTCGATCAAA GACCCGTTCT TTATCCTGCC GATCATCATG GGCGCGACCA TGTTCATCCA GCAGCGTTTG AACCCTACTC CGCCGGACCC GATGCAGGCC AAGGTCATGA AAATGATGCC GATCATTTTC ACGTTCTTCT TCCTGTGGTT CCCTGCCGGT CTGGTTCTGT ACTGGGTTGT GAACAACACC CTGTCGATCG CACAGCAGGC GTACATCACT CGCAAGATCG GAGCAGCTAC CAAGAAAGCA GCTGCCTGA
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Protein sequence | MDIKRTILIV ALAIVTYVGV LKWNQDYGQA AMPTQNVAAS NTAPGIPDTA AGNNGSASAD VPSATGNTTS AAPLETPAVA SKDLIHVKTD VLDLAIDPVG GDVVQLRLPL YPRRQDRPDV PFQLFDNGGE RTFLAQSGLT GTNGPDARAS GRPVYSSAQK SYQLADGQDS MVVELKFSEN GVNYIKRFTF KRGLYDLVMT YVVDNQSAQP WAGNLFAQLK RDASSDPSST TATGTATYLG AALWTAAEPY KKVSMKDIDK GQIKENVQGG WVAWLQHYFV TAWIPDHNVT NAVQTRKDSQ GNYIIGFTSP TLSVAPGAQG ETTATLYAGP KSQAVLKELS PGLELTVDYG FLWFIAQPIF WLLQHIHAIL GNWGWSIIVL TMLIKGLFFP LSAASYKSMA RMRAVAPKLA VLKEQHGDDR QKMSQAMMEL YKKEKINPLG GCLPILVQMP VFLSLYWVLL ESVEMRQAPW ILWITDLSIK DPFFILPIIM GATMFIQQRL NPTPPDPMQA KVMKMMPIIF TFFFLWFPAG LVLYWVVNNT LSIAQQAYIT RKIGAATKKA AA
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