| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5586 |
|---|
| Symbol | |
|---|
| ID | 1187278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6365506 |
|---|
| End bp | 6366504 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396901 |
|---|
| Product | capsular polysaccharide biosynthesis protein |
|---|
| Protein accession | NP_795306 |
|---|
| Protein GI | 28872687 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.851116 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGC TCGTGACAGG CGCCGCCGGA TTCATTGGCT TCCACGTTGC CAAACATCTG
TGTGAGCAGG GTATTGAAGT TGTCGGCATC GATAACCTGA ACGATTACTA CAGCGTCGAA
CTGAAACATT CACGACTGGC CATCCTTGAG CGCATGCCAG GTTTCGTCTT CAAAAGGCTG
GACATTACGG ATGCAACGGG TCTGTCCACT CTGTTCGAAC ACAATACCTT CGAACAGGTC
ATTCACCTCG CCGCCCAGGC GGGTGTGCGC TATTCGATGG AGCAACCCGA CGCCTACATC
CAATCCAATC TGGTCGGTTT CAGCAACGTG CTCGAGGCCT GCCGCCAGCA CCGCCCCTCG
CACCTGATTT ATGCCTCCAG CAGTTCGGTC TACGGGGCCA ATACGCGCCT GCCGTTTCGG
GTGGAGGATG CCGTCGACAG GCCGCTCTCC CTCTATGCGG CCACAAAGCG CGCCAATGAG
CTGGCGGCTT ACAGCTACTG CCACCTGTAC GGCTTGCGAG CTACCGGGCT GCGCTTTTTC
ACGGTTTACG GCCCCTGGGG TCGACCGGAC ATGGCGCTGT TCAAGTTCAC CCAAGCCATG
CTCCGCGAAG AGCCTGTGGA CATTTACAAC CATGGTGAGA TGGCGCGGGA TTTCACCTAC
ATCGACGACA TCGTGGAAAG CATCCTACGC CTGCGTCTGC GCCCGCCCGA GCCAGCGGGC
GGTGAGCCTG CACATCAGCT CTTCAACATC GGACGCGGCC AGCCCGTCAA GCTGCTGGAG
TTCGTCGATT GCCTGGAAAA GGCGCTGGGC CTCAAGGCCC AGCGTCGCTA TCTCCCTCTG
CAGGCAGGCG ATGTACTGCA GACCTGGGCT GACGTTACCG CCTTGGCCCG TTGGATCGAT
TTCCAGCCGC ACGTCTCGGT CGACAGCGGT GTGAGCGCGT TCGTTGAGTG GTACCGAGAG
CATTATCAAT CCGGACCGCC TCCGCTATCT CTCCAATAA
|
|---|
| Protein sequence | MTVLVTGAAG FIGFHVAKHL CEQGIEVVGI DNLNDYYSVE LKHSRLAILE RMPGFVFKRL
DITDATGLST LFEHNTFEQV IHLAAQAGVR YSMEQPDAYI QSNLVGFSNV LEACRQHRPS
HLIYASSSSV YGANTRLPFR VEDAVDRPLS LYAATKRANE LAAYSYCHLY GLRATGLRFF
TVYGPWGRPD MALFKFTQAM LREEPVDIYN HGEMARDFTY IDDIVESILR LRLRPPEPAG
GEPAHQLFNI GRGQPVKLLE FVDCLEKALG LKAQRRYLPL QAGDVLQTWA DVTALARWID
FQPHVSVDSG VSAFVEWYRE HYQSGPPPLS LQ
|
|---|
| |