| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5550 |
|---|
| Symbol | |
|---|
| ID | 1187242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6321553 |
|---|
| End bp | 6322857 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396869 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_795274 |
|---|
| Protein GI | 28872655 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATGG CTGTCGAAAC GCGTTGCCTG GTAGATGTTC AGAAGGTCCG ACACGTATAC
GGCAAAGGCA GCAAAGAGCG CTTGGTGCTG GAAGACGTGA CACTGCAACT CAACGAGAAC
GAAATCGTCG GTCTTCTGGG CCGCTCAGGC TCGGGCAAGT CCACCCTGTT GCGTTCCATC
GCCGGGTTGG TGGTGCCGAC CGAGGGCGAG GTGAATTTCC CTCGTCGTGT GCAGGGGCGG
GCGATGTCGG TAGGCATGGT GTTCCAGAGC TTCGCCTTGT TCCCGTGGCT GACCGTGCTG
GAAAACGTTG AAGTCGGGCT TGAGGCGCAG CGTGTGCCTG CTGCCGTGCG TCGCAAGCGC
GCGCTGGCGG CCATCGACCT GATTGGCCTG GACGGCTTTG AAAGCGCTTA CCCCAAAGAG
CTGTCCGGCG GCATGCGCCA GCGCGTGGGC ATGGCGCGGG CGCTGGTGAT CGACCCTGAC
GTGTTGCTGA TGGACGAGCC TTTTTCTGCG CTCGATGTGC TGACCGCCGA AACCCTGCGC
ACTGACCTGC TGGACATGTG GAGCGAAGGG CGCATGCCCA TCAAGTCGAT CCTGATGGTC
ACGCACAACA TTGCCGAGGC CGTGCTGATG TGCGATCGCA TCCTGCTGTT CTCCTCCAAT
CCGGGGCGGG TGATCAGCGA GATCAAGGTC GATCTGCCAC AGCCGCGCAA TCGTCAGGAC
CCGATTTTCC GGGCATTGGT GGAAGAAATC TACGTGCTGA TGACCCAGGA CAACGATGCC
GGCGAGATTC GTCAGGGCGT GTTTCCGGGC ACCGGTCTGG GCATGGTCTT GCCGCAGGTG
TCCACCAATG CGCTGGCCGG TCTGATCGAA GCGATCCATG CGCCGCCTTA CAGCCTCAAG
GCCGACCTGC CGGAACTGGC CAGCGCACTG CATTACAACG CCGACGAGCT GTTCCCGATT
GCCGAAGTCC TGCAACTGCT GCGTTTTGCC GAGCTGAAGG GGGGCGACAT ACGTTTGCTG
CCGGCTGCAA ATCGCTACGC ACTGGCGGAT GTGGACGAGC GCAAGCAGCT GTTTGCCCAG
CATCTGCTGA GCTTCGTGCC GCTGGTCGCG CATATTCGGC GGGTGCTGGA TGATCGCCCT
ACGCACACGG CACCGGCGCG GCGTTTTCGT GATCAGCTGG AAGATTTCAT GTCCGAAAGC
GACGCCATGC AGACCCTGAA TGCTGTTACC CAATGGGGGC GCTACGCCGA GTTGTTCGCG
TACGATGAGC TGGCCGATCA GTTCAGCCTG GATAACCCGT CCTGA
|
|---|
| Protein sequence | MMMAVETRCL VDVQKVRHVY GKGSKERLVL EDVTLQLNEN EIVGLLGRSG SGKSTLLRSI
AGLVVPTEGE VNFPRRVQGR AMSVGMVFQS FALFPWLTVL ENVEVGLEAQ RVPAAVRRKR
ALAAIDLIGL DGFESAYPKE LSGGMRQRVG MARALVIDPD VLLMDEPFSA LDVLTAETLR
TDLLDMWSEG RMPIKSILMV THNIAEAVLM CDRILLFSSN PGRVISEIKV DLPQPRNRQD
PIFRALVEEI YVLMTQDNDA GEIRQGVFPG TGLGMVLPQV STNALAGLIE AIHAPPYSLK
ADLPELASAL HYNADELFPI AEVLQLLRFA ELKGGDIRLL PAANRYALAD VDERKQLFAQ
HLLSFVPLVA HIRRVLDDRP THTAPARRFR DQLEDFMSES DAMQTLNAVT QWGRYAELFA
YDELADQFSL DNPS
|
|---|
| |