Gene PSPTO_5528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5528 
Symbol 
ID1187220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6293693 
End bp6294916 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content63% 
IMG OID637396847 
ProductN-acetylmuramoyl-L-alanine amidase, family 3 
Protein accessionNP_795252 
Protein GI28872633 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACCGAC GTCAAGTGTT GCTCAATATG TTGCTGGCCA GCGCCGCCCT GACGTTGCCG 
TTTGGCGTGT GCGCTACGCA GATCAGTAAT GCGCGCCTTT GGCGGACCAA CGACAAGCTA
CGGCTGGTGC TCGACCTGAG CGGCCCGGTG CAATACAAAA CCTTCTCGCT GACTTCGCCC
GACCGTCTGA TCATTGATGT CAGCGGTTCG CGGCTGACTG GCGATTTCAG CCAGCTGGCG
CTGGATCGCA CGGTTATCAA ATCGATTCGT TCCGGTCACT ACGGCACGGG CGATGACACG
CGCATCGTGC TAGACCTGAC TGCGCCGGTG CAGCTCAACA GCTTCTTGCT CGGCCCGGAA
GGCGGGCAGG GCCACAGGCT GGTGCTGGAC ATGAGTTCCA CGGCTCGTGC GCCGGTACAG
ATGGCCGAGC TGCCGCCGCC CGTGCCGGTT CCCATCCAGA GCAAAGCGCG CACCGGCCGC
GACATCATGG TGGTGGTCGA CGCCGGTCAT GGCGGCAAGG ACCCAGGTGC TGTCGGGTCG
CGTGGCGAGC GCGAGAAAGA TGTGGTGCTG TCGATCGCCC AGTTGCTGGC CAAACGCTTG
AAGCGCGAGA AGGGTTTTGA TGTGCGCTTG GTGCGCAATG ACGACTTCTT TGTGCCGCTG
CGCAAGCGCG TCGAGTTCGC GCATAAATCC AATGCCGACA TGTTCATCTC CGTGCACGCC
GACGCCGCGC CTCGTCTGAC GGCGTCCGGT GCTTCGGTGT TCGCGTTGTC CGAAGGCGGC
GCCACGTCGG CAACCGCGCG CTTCATGGCG CAGCGGGAAA ACGGTGCGGA CCTGCTGGGC
GCGACGTCGC TGCTCAACCT CAAGGACAAG GACCCGATGC TTGCCGGGGT GATTCTCGAC
ATGTCGATGA ACGCCACCAT CGCCGCCAGT CTGCAACTGG GTCACACGAT ACTGGGCAGC
CTGGAAGGCA TCACCACGTT GCACCAGAAG CGTGTGGAAC AAGCCGGATT CGCGGTGCTC
AAATCGCCGG ATGTGCCGTC GATTCTGGTT GAAACCGGGT TCATCTCCAA CAGCCGTGAC
AGTCAGCGTC TGGTCACAGC GCGCCATCAA CAGGCCGTTG CGGACGGGCT GTTCGATGGC
CTGCAACGTT ACTTCCAGCG CAACCCGCCC ATGGATTCGC ACCTGGCCTG GATGCAGGCG
CAAAAGCAGG AGCAGCAGGC GTGA
 
Protein sequence
MHRRQVLLNM LLASAALTLP FGVCATQISN ARLWRTNDKL RLVLDLSGPV QYKTFSLTSP 
DRLIIDVSGS RLTGDFSQLA LDRTVIKSIR SGHYGTGDDT RIVLDLTAPV QLNSFLLGPE
GGQGHRLVLD MSSTARAPVQ MAELPPPVPV PIQSKARTGR DIMVVVDAGH GGKDPGAVGS
RGEREKDVVL SIAQLLAKRL KREKGFDVRL VRNDDFFVPL RKRVEFAHKS NADMFISVHA
DAAPRLTASG ASVFALSEGG ATSATARFMA QRENGADLLG ATSLLNLKDK DPMLAGVILD
MSMNATIAAS LQLGHTILGS LEGITTLHQK RVEQAGFAVL KSPDVPSILV ETGFISNSRD
SQRLVTARHQ QAVADGLFDG LQRYFQRNPP MDSHLAWMQA QKQEQQA