| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5504 |
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| Symbol | |
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| ID | 1187196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6270147 |
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| End bp | 6271709 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637396823 |
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| Product | transcriptional regulator, GntR family |
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| Protein accession | NP_795228 |
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| Protein GI | 28872609 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCAG ACCGCGTTGC GTTTCCACCC ACGCTTATCG GTATCGAACT GGACCCACGC
CAAGGTCTTA GCAAGCAGCT GTATGAAATT CTGCGTCGGC AAATCCTCGA CGGACGCCTG
AGCAGCGGCA TGCGCCTGCC TGCCAGCCGG GATCTGGCAA AATCGCTGGC GATTTCTCGC
AACAGCGTGA TGCGCGCCTT CGATCAGCTA TACGCCGAAG GTTTCATTGA AGGGCGCGTT
GGCGATGGCA CATACGTCGC GCAACTGGCC GGACGTCACG CTGCGCTTCA GCGCAATGCT
CCCGGAAAAC TATCCACCAA CTTACCCACA GGTTTGCACA CAGGGTTATG CACAGGTTTG
TCCACATTTG CGGTTGAAAA CACGCAGAAT CTGCTGAATC AAGTTATCCA CAACCCCGCG
CTGCAACGGG TTGAAAAGCA CCACCTCAAT GAGCCCCCGG ATGACCGGCC CAAGGCCTTT
AGGGTCGGGG TTCCCGCGTT TGACCTTTTC CCGTTCGCCT TGTGGGGCAA GCTGTATGCG
TCTTTTTGGC GCAAGCCAAA TCTCGATCAA CTGGGCTATG GCGCTGCGGC GGGAGAGTGG
CGGCTGCGAG AGCTGGTTGC GGCGTATCTT CGCTCCTCGC GAGGGCTGGG CTGTACTGCT
GAGCAAATTG TGATCACCAG TGGCGCGCAG CACGCAATCA GCCTTTGTGC ACAGCTGCTG
GTGACGCCAG GCGAGGGCGT TGCAGTGGAA AATCCGGGCT ATCGCGCGGC AGGTCACGCG
TTCGCACTGG CTGGTGCGCG GTTGCAGGGT GTAGCGGTGG ACAGCGAGGG TATGCGTTGC
GCCGACCTTG AGCAGACGGA CTGTCGGCTG GCGTACGTTA CGCCTTCGCA TCAATACCCT
ACAGGCGTGG TCATGAGCCT GGCCCGGCGT CTGGAGTTGC TGGCCTGGGC CGAGAAAAAC
CAGAGCTGGA TCGTCGAGGA CGATTACGAC GGCGAGTACC GCTACAGCGG GTCGCCCTTG
GCACCCTTGG CTGCGCTCGA TCAGAACGGG CGAGTGCTTT ACGTCGGGAC GTTCGGCAAG
ATTGTTTTCC CGGCGCTGCG CCTGGGCTAT CTGGTGCTGC CCGAGCATCT GGTGCGTCCG
TTCAGCCAGC GCAAGGCGGT GGACATGCGC CATACCGAGA TCGGCGTGCA GGCGGTCATG
GCGCAATTCA TTGCCCAAGG GCATTTTCAG CGACACATCC GCCGCATGCG TCGTGCGGCC
CTGAGTCGTC GTGATGCGCT GCTGGCCGGC TGGCCTGACA ACGTTCCCGG CTGCGCGGCA
ATGCCCAAAG TCGTGGCGGG CCTGCACGTA ATGGTCAAGG TCGACAGCGT TGCGCGCGAG
CAAGCGTTGA TTGCCAAAGC CAGAAGCGTT GGCGTCGAGA TGAGCCCATT GAGTGGATAC
TGGCTGTCCG ATTCCGACGA GCCTGTGGAT AACCGTGCCG GTCTGGTGCT TGGGTTCGCC
GCTGTGCCTG AGCCCGCCAT CGCGGATGCG TTGAACAGGC TACGCATGGT CTGGTCGGAG
TAG
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| Protein sequence | MPADRVAFPP TLIGIELDPR QGLSKQLYEI LRRQILDGRL SSGMRLPASR DLAKSLAISR
NSVMRAFDQL YAEGFIEGRV GDGTYVAQLA GRHAALQRNA PGKLSTNLPT GLHTGLCTGL
STFAVENTQN LLNQVIHNPA LQRVEKHHLN EPPDDRPKAF RVGVPAFDLF PFALWGKLYA
SFWRKPNLDQ LGYGAAAGEW RLRELVAAYL RSSRGLGCTA EQIVITSGAQ HAISLCAQLL
VTPGEGVAVE NPGYRAAGHA FALAGARLQG VAVDSEGMRC ADLEQTDCRL AYVTPSHQYP
TGVVMSLARR LELLAWAEKN QSWIVEDDYD GEYRYSGSPL APLAALDQNG RVLYVGTFGK
IVFPALRLGY LVLPEHLVRP FSQRKAVDMR HTEIGVQAVM AQFIAQGHFQ RHIRRMRRAA
LSRRDALLAG WPDNVPGCAA MPKVVAGLHV MVKVDSVARE QALIAKARSV GVEMSPLSGY
WLSDSDEPVD NRAGLVLGFA AVPEPAIADA LNRLRMVWSE
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