Gene PSPTO_5475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5475 
Symbol 
ID1187167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp6235375 
End bp6235935 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content62% 
IMG OID637396794 
Productchorismate-pyruvate lyase, putative 
Protein accessionNP_795199 
Protein GI28872580 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCCAGC ATTCCCCCGC ATTCGTTACC CCTGACTGGC TTGAGCGCGA GCAACTGACT 
GACACGCCCA CACCTGTATT TTTCGGCTGG CTATTCAATC AGCAATCCCT TACACGCCGA 
CTGGACCGCC TGTCTGACGG CGGCTTCGAT ATCGTTCCCC TGTCTGAAGG CTGGCAAGCG 
TTGCGCGACG ACGAATGCGC CGCTTTGGGC TTGCCAGCAG CCAGCGAAGG CTGGGTGCGC 
GAGGTGTACT TGCGCGGTAA CGGCGAAAAC TGGGTGTTCG CCCGTAGCGT CGCCGCACGG 
GACGCGCTGC AACACGGCGG TTTGCACATG GACGAACTGG GTACCCGCTC GCTGGGCGCA 
TTGCTGTTCA GCGACCCGGC GTTCGACCGC GGCACCCTCC AGGTGTGTCA TTACCCGCAA 
AGCTGGCTGC CTGATGCCGA TGCAGTTTCC GGGCTGTGGG CACGCCGCTC ACAATTCAGT 
CGCGGTGCGT TGAGCGTGCT GGTTGCCGAA GTTTTTCTGC CCGCCCTGTG GAATGCGATT 
CATAACAAGG ACCACGCCTG A
 
Protein sequence
MTQHSPAFVT PDWLEREQLT DTPTPVFFGW LFNQQSLTRR LDRLSDGGFD IVPLSEGWQA 
LRDDECAALG LPAASEGWVR EVYLRGNGEN WVFARSVAAR DALQHGGLHM DELGTRSLGA 
LLFSDPAFDR GTLQVCHYPQ SWLPDADAVS GLWARRSQFS RGALSVLVAE VFLPALWNAI 
HNKDHA