Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5420 |
Symbol | |
ID | 1187107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6161765 |
End bp | 6163096 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637396737 |
Product | hypothetical protein |
Protein accession | NP_795147 |
Protein GI | 28872528 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.957862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCCC ATAAAGTCAT TTGGCAGGAA GGCATGTTGC TGCGCCCGCA GCACTTCCAG CACAACGATC GCTACTACGA TCACCAGATG AAAACCCGTA CCCAGTTATT GGGGAGCTAC ACGTGGGGTT TTCTGAGTCT GGACATCGAC CTGCAGTTTC TCAATATGGG CAAACTGGTG ATCAGCCATG CGTCGGGAAT CCTGCCGGAT GGCAGCCTGT TCGAGTTGGG GGGCAACACT GAGCCGCTGG CGCTCGATGT GCCGCCCAAT ACGGGTAATA CTCCGATCTA TCTCGCGCTG CCGCTGGTCA CGGGTAACCA CATTGAGTCG CGCCGCCCCG AGCAATCTGA TGTGCTGGCG CGCTATACCG CCTACGAGGC TGAGGTGTCC GACTCCAACG CTGGCGATGA CTCCTCGAGT CAGGTCAGTT GTGGTCGTCC CGACTTCAAG CTGTTGCTTG GCCAGCAGCA AAGCGATCAG GCTTACGTGA AGCTGAAGGT TTGCGAAGTA CTCGACACGA CGCCGGATGG CGTAATCAGC CTTGATCCCG ATTTTGTACC GACCTACATA CAGGCTCACG CTTCCAGCTA CCTGCTGTCT TGCCTCAAGG AAGTCATCAG CATGCTCAGC CACCGGGGCG ACACCATCGC TGACCGGATC CGTTCCAACG GCAAGGTAGG GGGTGCCGAA GTCGGCGACT TCATGATGCT GCAACTGATC AACCGTACCG AGTTGCTGCT GCGTCACTAT CTGGACCTTG AACAGGTGCA CCCTGAAGAG TTGTATCGCA CGCTGCTGAC CATGCTTGGC GATCTGGCGA CGTTTTCGAG CGATAGCAAG AGACCGCGTC TGGACAGCCG CTACCAGCAC AGCGATCAGG GAGCCAGCTT CCGCAAGCTG ATGGAGGCGA TCCGTCAGGT GCTGTCGATG GTGCTGGAAC AGCACGCCAT CGAACTGGTT CTACAGGCGC GTCAGTACGG CATCATCGTA TCGCCTCTGC ATGATCACAA GCTGTTGGGA TCGGCGTCGT TCGTTCTGGC AGCCAGCGCA AATTGCGACT CCGAGGAACT GCGTCACCGT TTGCCAGCGC ACCTCAAGGT CGGTCCTGTG GAGCGTATCC GCCAACTGGT CAACCTTCAT CTGCCTGGTA TCAAGGTCAA GCCATTACCG GTGGCCCCGC GGCAGATTGC GTTCCATACC AACAAAACCT ATTTCATCCT CGAACTCAGT TCCGAAGATC TGGCGCAACT CGAGCGCTCC GGCGGCTTCG CGTTCCATGT GTCCGGCGAA TTCGCCGAGC TTGAACTGAA ATTCTGGGCT ATCAGGAACT GA
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Protein sequence | MKSHKVIWQE GMLLRPQHFQ HNDRYYDHQM KTRTQLLGSY TWGFLSLDID LQFLNMGKLV ISHASGILPD GSLFELGGNT EPLALDVPPN TGNTPIYLAL PLVTGNHIES RRPEQSDVLA RYTAYEAEVS DSNAGDDSSS QVSCGRPDFK LLLGQQQSDQ AYVKLKVCEV LDTTPDGVIS LDPDFVPTYI QAHASSYLLS CLKEVISMLS HRGDTIADRI RSNGKVGGAE VGDFMMLQLI NRTELLLRHY LDLEQVHPEE LYRTLLTMLG DLATFSSDSK RPRLDSRYQH SDQGASFRKL MEAIRQVLSM VLEQHAIELV LQARQYGIIV SPLHDHKLLG SASFVLAASA NCDSEELRHR LPAHLKVGPV ERIRQLVNLH LPGIKVKPLP VAPRQIAFHT NKTYFILELS SEDLAQLERS GGFAFHVSGE FAELELKFWA IRN
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