Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5397 |
Symbol | rfbC-2 |
ID | 1187084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6129606 |
End bp | 6130151 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637396714 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | NP_795124 |
Protein GI | 28872505 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACGTAG TAGCCACACA ACTGCCGGAA GTCCTGATTC TGGAGCCCAA GGTATTCGGT GATGAACGAG GCTTCTTCTA TGAAAGCTTC AACGCAAGGG CCTTTCAGGA AGCCACTGGC CTGACCCGGC AGTTTGTACA GGACAATCAC TCGCGCTCGC AACGAGGCGT ACTGCGCGGC CTGCATTATC AGATCGAAAA CGCGCAGGGC AAGCTGGTGC GCGTCACTGT CGGCAAAGTG CTGGATGTGG CTGTGGACAT CCGCCGCAGT TCGCCGAACT TCGGGCGGTG GGTCGGCGTC GAGCTGTCCG CTGAAAACGC CCGTCAGTTG TGGGTTCCGG AAGGGTTTGC GCATGGTTTC GTGGTGCTCA GCGAGCATGC CGAGTTCCTT TACAAGACCA CCGACTACTA CACGCCTTCG GCCGAGCGCT GTATCGCCTG GAACGACCCT GACCTGGCGA TCGACTGGCA GTTCGACGGC GAGCCCAGCC TGTCAGCCAA GGATCAGCAA GGCAAAAGCC TGAAAGACGC CGATCTGTTT TCCTGA
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Protein sequence | MNVVATQLPE VLILEPKVFG DERGFFYESF NARAFQEATG LTRQFVQDNH SRSQRGVLRG LHYQIENAQG KLVRVTVGKV LDVAVDIRRS SPNFGRWVGV ELSAENARQL WVPEGFAHGF VVLSEHAEFL YKTTDYYTPS AERCIAWNDP DLAIDWQFDG EPSLSAKDQQ GKSLKDADLF S
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