| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5318 |
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| Symbol | |
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| ID | 1187003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6046664 |
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| End bp | 6048010 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637396637 |
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| Product | outer membrane porin, OprD family |
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| Protein accession | NP_795049 |
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| Protein GI | 28872430 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGT CCACCCTGGC CTTGGCCGTA ACCGTCGCGG CATTGGCTCA GCAGGCCGGT
GCAGCTGGTT TCCTTGAAGA CAGCAAAGCG TCCGTCAGTT CTCGTACTCT GTATTTCAAC
AACGACCTGC GTGAAGGCCG TCGTGCACCC GATCAGCGCG AAACCGCGAC CGGTTTGAAA
TTTGACTACA CCTCGGGCTT TACCCAGGGC ACCGTTGGGT TTGGTCTTGA TGCACAAGCC
GTGATGGGTC TCCATCTGGG CGGCGGCATT CAGCACCATA CTGTCAACAC GGCCAACACC
GTTGTTCCGA CCGATACTGA TGGTTCTTCG GTCAGCGACT GGTCCCGTGT AGGCGCCAAC
GCCAAGATGC GCTTCTCCAA AACTGAATTG AAGGTCGGTA ACGCTCTGGC GCCTAACCTG
CCAATTCTGG TCGCCAACGA TGGTCGTCTG TTGCCTCAAG CTTTTGAGGG CGGCATCCTG
ACTTCGAAGG ATCTGGACAA TGTTACCTTC ACTGCCGGTC AACTGAACAA GTCCATAGGC
CGTGCTTCGA GCAACTGGAC TGACCTGTCC GTTGCCGGTG CTACTCAGAC CGCCGATCAG
TTCCGTTTCG CGGGTGCTGA CTGGAAAGTT ACCAAAGACC TGACCTTGCA GTACTACTAC
GCCAACCTGG AAGACTTCTA CAAGCAGCAC TTCCTGGGCC TGGTTCATGT TTACCCGATC
AGCGACAACC AGTCTTTCAA GACTGACCTG CGTTATTTCA ACAGCAGCTC TGACGGTAAA
AACAGCGAGG CCGCCGCAGG CTATCGCTTC AACAACAACG GTGGTTACGC CTCACACGCC
GGTGAAGTCG ACAACCAGAC CTGGTCTGCC ATGTTCACCT ACGCTTTGGG CGGTCACTCG
TTCATGGTTG GTCACCAGCA AGTGGGTGAC AGCGGCGGCA TGGTCTTCCT TGGCCAGGGT
AACGTAGTGG ACGGTCGCGG CCGTCCTGAA GGCAACGGCG GTTCAAGCTT CTACCTGTTC
ACCGATTCGA TGATCAACGG CTTCAACCGT GCTGGTGAAA ACACCACATT CGGTCAGTAC
TCGTATGACT TCGCCAAGGT CGGTGTTCCA GGTTTGAAAG CCGCGATTGC TTACTTGAGC
GGTGATGACA TCCGTGACGT AAACCGCAAT CTGGGTACTC ACTCCGAGTG GGAACGCGAT
ATGCGCGTTG ACTACGTGAT TCAAAGCGGC GTGTTGAAAG GCTTCGGCAC CACTGTACGT
CACGGCACCT TCCGCGGTGA CGTTGCCACT ACTGCTGATA CCGATCAAAC CCGTATTCTC
TTCAACTACA CCTACAACTT CATGTAA
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| Protein sequence | MKKSTLALAV TVAALAQQAG AAGFLEDSKA SVSSRTLYFN NDLREGRRAP DQRETATGLK
FDYTSGFTQG TVGFGLDAQA VMGLHLGGGI QHHTVNTANT VVPTDTDGSS VSDWSRVGAN
AKMRFSKTEL KVGNALAPNL PILVANDGRL LPQAFEGGIL TSKDLDNVTF TAGQLNKSIG
RASSNWTDLS VAGATQTADQ FRFAGADWKV TKDLTLQYYY ANLEDFYKQH FLGLVHVYPI
SDNQSFKTDL RYFNSSSDGK NSEAAAGYRF NNNGGYASHA GEVDNQTWSA MFTYALGGHS
FMVGHQQVGD SGGMVFLGQG NVVDGRGRPE GNGGSSFYLF TDSMINGFNR AGENTTFGQY
SYDFAKVGVP GLKAAIAYLS GDDIRDVNRN LGTHSEWERD MRVDYVIQSG VLKGFGTTVR
HGTFRGDVAT TADTDQTRIL FNYTYNFM
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