Gene PSPTO_5280 details

Gene Information

• Locus tag: PSPTO_5280
• Symbol: cadR
• ID: 1186965
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 6005880
• End bp: 6006326
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637396599
• Product: transcriptional regulator CadR
• Protein accession: NP_795011
• Protein GI: 28872392
• COG category: [K] Transcription
• COG ID: [COG0789] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR02047] Cd(II)/Pb(II)-responsive transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATCG GCGAACTGGC AAAACTGACC GATACCCAGG TCGAAACCAT CCGTTATTAC 
GAGCGCGAAG GCCTGCTGCC CGCCCCCGCC CGCAGTGATG GCAACTACCG GCTGTACACC 
CAGGCGCACA TGGAACGCCT GTCGTTCATC CGCAATTGCC GCAGCCTGGA CATGACCCTC 
GAAGAGATTC GCAACCTGCT CAACCTGCGC GACAGCCCGC AGGACCAGTG CGAAAGCGTC 
AATGCGCTGA TCGACGAGCA CATCGAACAC GTCAACGCCC GCGTCGCGAG CCTGCAAGCG 
CTCCAGGAGC AACTGCTCGA CCTGCGCCGC CGCTGCAGCG ATGGCGTGGC GGACCACTGC 
GCGATACTGG AGAGGCTGGA AGTGACAGGC GCTGTTGCGG CGCCCGAGGG TGAGCCCTCG 
CATGTGGGCA GGAGTCATGG GCATTGA 

 

Protein sequence

MKIGELAKLT DTQVETIRYY EREGLLPAPA RSDGNYRLYT QAHMERLSFI RNCRSLDMTL 
EEIRNLLNLR DSPQDQCESV NALIDEHIEH VNARVASLQA LQEQLLDLRR RCSDGVADHC 
AILERLEVTG AVAAPEGEPS HVGRSHGH