Gene PSPTO_5269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5269 
SymbolbetT 
ID1186954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5989584 
End bp5991578 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content60% 
IMG OID637396588 
Productcholine transporter 
Protein accessionNP_795000 
Protein GI28872381 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTCTC CGAGTACTTC TTCAAGTGGC ACCGTCCGCA TGAACGCTCC AGTGTTCTAC 
TTCGCTGCGA GTTTCATCCT GATTTTCGGC ATCATTGTCA TCGCCTTCCC GCAAGCCAGC
GGCGCCTGGC TGCTGGCCGC GCAGAACTGG GCTGCCAACA CGGTCGGCTG GTATTACATG
ATGGTCATGA CCCTGTACCT GGTCTTCGTG GTGGTCACCG CCTTGTCGGG CTTCGGCAAG
ATCAAGCTCG GTGCCGACCA CGACGAACCC GAGTTCAGTT ACCTGTCATG GGCCGGCATG
CTGTTCGCCG CCGGGATCAG CATCACGCTG TTCTTCTTCT GCGTTTCAGA GCCGCTGACG
CATTTGCTGC AACCGCCGCA GGGTGAAGGG GGCACGGCTG AGGCTGCGCG CCAAGGCATG
CAACTGCTGT TTCTGCACTG GGGCCTGCAT GGCTGGGGCG TGTTTGCTTT TGTCGGTATG
GCGCTGGCCT ACTTCGCCTA TCGCCACAAC CTGCCGCTGG CCCTGCGTTC GGCGCTGTAC
CCGCTGATCG GCAAGCGCAT CAACGGCCCT ATCGGCTACG CCGTCGATGG CTTCGGCATC
ATCGCGACCA TCTTCGGGCT TGGTGCAGAC ATGGGTTTCG GCGTGCTGCA CCTTAACTCC
GGTCTCGATT ACCTGTTTGG CGTACCGCAC ACTCAATGGA TTCAGGTCGG CCTGATCACC
CTGATGATGG GCGCGGCGAT TCTGGTTGCC ATCGCCGGTG TCGACAAGGG CGTGCGCGTG
ATGTCCGACA TCAACATGCT GCTGGCCTGT GCGCTGCTGC TGTTCGTGTT GTTTGCAGGT
CCCACTCAGC ATTTGCTCAA CACGCTGGTG CAGAATATCG GTGACTACCT GGGCGCGCTA
CCGAGCAAGA GTTTCGACGT CTACGCCTAT AACAAGCCGA GTGACTGGCT GGGCGGCTGG
ACCGTGTTCT ATTGGGCCTG GTGGATTGCC TGGGCACCGT TCGTGGGCCT GTTCATCGCG
CGTATTTCCC GTGGCCGCAC CATCCGTGAA TTCGTTTTCG GTGTGCTGCT GATTCCGCTG
GGCTTCACCC TGGCGTGGAT GTCGATCTTC GGCAACAGCG CCATCGATCA GGTGCTCAAC
CACGGCATGG CTGCGCTGGG CCAGTCGGCT ATCGATGACC CGTCGATGAC GCTGTACCTG
CTGCTGGAAA CCTACCCGTG GAGCAAGACG GTCATCGCGG TCACGGTGTT CATCAGCTTC
GTGTTCTTCG TTACGTCGGC CGATTCGGGC ACTGTGGTGC TGTCGACGCT CTCGGCCAAA
GGCGGCAACC CCGACGAAGA CGGCCCGAAA TGGCTGCGCG TGTTCTGGGG TGTGGCGACG
GCGCTGATCA CCAGCGGCCT GTTGTTCTCG GGCAGTATCG ATGCGTTGAA ATCGGCGGTG
GTGCTGACCT CGCTGCCGTT TTCGCTGATC CTGCTGCTGA TGATGTGGGG CCTGCACAAG
GCGTTCGTCA TGGAATCCCA GCGCCAGATT GCGCAGCTGT ATTCGCTGGC GCCAGTTTCC
GGCTCACGAC GTGGCGGCTG GCGTCAGCGC CTGAGCCAGG CCGTGCATTA CCCGTCGCGA
GACGAGGTGT ATCGCTTCCT CGACCAGACC GTGCGTCCGG CCATTGATGA AGTAACGGCG
GTGTTTGTCG AAAAGGGCTT GAACGTGGTC AACGTTCCCG ACCCGTCCAA CGACTCGGTG
ACCCTGGAAA TCGGCCACGG GGAAGAGCGC CCGTTCATCT ACCAGGTGCA GATGAAAGGC
TTCTTCACCC CGTCGTTTGC GCGTGGCGGC ATGGGTTCCA AACAGTTGAA CAACCGCCGC
TACTACCGCG CCGAGGTTCA CCTCAGCGAA GGCAGTCAGG ACTACGACCT GGTGGGCTAC
ACCAAGGAGC AAGTCATCAA CGACGTGCTC GACCAGTACG AACGGCATAT GCAGTTTCTG
CATCTGGTGC GTTGA
 
Protein sequence
MSSPSTSSSG TVRMNAPVFY FAASFILIFG IIVIAFPQAS GAWLLAAQNW AANTVGWYYM 
MVMTLYLVFV VVTALSGFGK IKLGADHDEP EFSYLSWAGM LFAAGISITL FFFCVSEPLT
HLLQPPQGEG GTAEAARQGM QLLFLHWGLH GWGVFAFVGM ALAYFAYRHN LPLALRSALY
PLIGKRINGP IGYAVDGFGI IATIFGLGAD MGFGVLHLNS GLDYLFGVPH TQWIQVGLIT
LMMGAAILVA IAGVDKGVRV MSDINMLLAC ALLLFVLFAG PTQHLLNTLV QNIGDYLGAL
PSKSFDVYAY NKPSDWLGGW TVFYWAWWIA WAPFVGLFIA RISRGRTIRE FVFGVLLIPL
GFTLAWMSIF GNSAIDQVLN HGMAALGQSA IDDPSMTLYL LLETYPWSKT VIAVTVFISF
VFFVTSADSG TVVLSTLSAK GGNPDEDGPK WLRVFWGVAT ALITSGLLFS GSIDALKSAV
VLTSLPFSLI LLLMMWGLHK AFVMESQRQI AQLYSLAPVS GSRRGGWRQR LSQAVHYPSR
DEVYRFLDQT VRPAIDEVTA VFVEKGLNVV NVPDPSNDSV TLEIGHGEER PFIYQVQMKG
FFTPSFARGG MGSKQLNNRR YYRAEVHLSE GSQDYDLVGY TKEQVINDVL DQYERHMQFL
HLVR