Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5244 |
Symbol | |
ID | 1186929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5963595 |
End bp | 5964299 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637396563 |
Product | transcriptional regulator, GntR family |
Protein accession | NP_794975 |
Protein GI | 28872356 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCGAACA CTTCACTCGC AGTACCCGAA TCAGCCCTGC GGGCCATTCG CAAGTTGATT GCCGAGCAAG GGTACAAGCC TGGCGAAAGC CTGCCGTCGC AGCGCGATCT GGCGGTTTTG CTGGGGGTCA GTCGTGCATC GCTGCGCGAA GCTCTTTCAT CGCTCAGCGC GTTGGGCGTG GTCAGCGTTC AGCCCGGTAA AGGCGTGTTC GTGCAGTCGA TTTCTGAACC AGAACAGCGC ACGGGCGGAT TTTCCTGGCC GTTCGACGCT CAGGTTTCAC CTGCTGATAC CTTCCAGTTG CGTTATGCCC TGGAAGGTTT CGCTGCGGGG CTGGCCGCCG TGACCCTGAC CGCCGACGAG CGCGACGTGC TGGAAGACAA CGTCGAAGCC ATGCGCCTGG AGTTGCGCAG CGGAGATTTC GAGGCGGCGG CCAGGCTGGA TTTCGAGTTT CATCGGCATA TTCTGGTCGC CAGTGGCAAT CAGGCCATGC TGGGGATCGT CACCGCAGGC GCCGATATTT TTCTGGAAAG CCAGAAAATG CCGTTCATAC GCGCGGCCAG GGTTATGGAA ACCTGGCAAG AACACCGCAA GATCCTTCGC GCGCTGGCCC GCCATGCGTC GGGGCCTGCG CAAAAAGCCA TGCAGGAGCA CATACGAGGC GCAGCGCTGC GCACCGGTAT CGTGTTCGTT TCGCCCTCTG GCTGA
|
Protein sequence | MPNTSLAVPE SALRAIRKLI AEQGYKPGES LPSQRDLAVL LGVSRASLRE ALSSLSALGV VSVQPGKGVF VQSISEPEQR TGGFSWPFDA QVSPADTFQL RYALEGFAAG LAAVTLTADE RDVLEDNVEA MRLELRSGDF EAAARLDFEF HRHILVASGN QAMLGIVTAG ADIFLESQKM PFIRAARVME TWQEHRKILR ALARHASGPA QKAMQEHIRG AALRTGIVFV SPSG
|
| |