| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5200 |
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| Symbol | |
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| ID | 1186885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5917963 |
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| End bp | 5920923 |
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| Gene Length | 2961 bp |
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| Protein Length | 986 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637396519 |
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| Product | autotransporter, putative |
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| Protein accession | NP_794931 |
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| Protein GI | 28872312 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTGGACCA CCGGCGCGAC CTGGGACACC GGCACACCGA CCGCGCTGGG GCAGAGTCTG
CTGCGGCGCA ACCTGCAAAT CGTGGTTGAC CGCGCCAACT CGCGCACGCT GGCTCAGGAA
ACCGCCGCCT ATTTCGATGA CCGCCGTGAC CAGAGCTACA GCGCCACCAG CGGCCTGGGC
TCGCTGACCG CGGCCTACAG AGCAGGCGCT GGCGCTTTCA CCACCATCAC GCAATTCGAT
GACAGCAACA AAACCGTCAA ATACGACGAC AAAGGCAATG GCGCAGGCAG TTCGACTTCC
GCACTGGGCA AGGTGGTCGA TCTGGTCGGC GCGGTGCGCA ACGACGCGTC CACCACGCCA
GCCAAATCCC ACTATTTGTA CCCGCGCCCG TGGCGACAAA GCCTGGATGG GCAAAGCCTG
GCCTTCGTGG TTGCGCCTTC CCTGCGCCCG GCGCAAAGCA CCACGCCAAC CAGCGACTCG
GGGTTCCCCA GCGGGCATAC CAACGCAGCC TACTTGTCTT CCTACGCATT GGCCTACGCC
ATCCCTGAGC GTTTCAGCGA GTTGATGCTG CGCGCCTCGG AGATTGGCGA CAACCGCATC
GAAGCCGGCA TGCACTCGCC GTTCGACGTG ATGGGCGGGC GCATCACCGC GACCTATTTT
GCCATCGACA ACCTGTCCAA CCCGGCCAAC GCTCAACTGC GCGCCGACGC CCGCGCCCAG
GCACTGAATT ATTTCACCGC GCAGTGCGGC GGCGACGTCA ATAACTGCAT GGCAACCATC
GACCCGGCCA CTGACCGTAC CTCCCAACAC GCGCTGGACA AGGCGCTGTA CACCTCGCGC
ATGACCTATG GCTTCGACCC GGTTGGCCCG ACCAACCTGG CCCCCGTGGT GCCGACCAAC
GCCGAAGTGC TGCTGGAAAC CCGCTTTCCG TACCTGGACG CCAGTCAGCG CCGCGAGATC
CTGGCGACCA CTGAAATTTC GTCGGGCTAT GCGGTGATCG ATCAGTCCGG CGGTTATGGC
CGTCTGAACC TGTACGCAGC GGGCGATGGC TACGCAGCGT TCAATTCCAA CGTCACAGTC
AACATGAACG CCAGCCTGGG CGGCTATAAC GCCATCGACG CCTGGCGCAA CGACATCAGC
GGCAGCGGCG CGCTGATCAA GAACGGCGGC GGCAACCTGA TGCTGACCGG CAACAACACC
TACTCGGGCG GCACCGTGAT CAACGGCGGC GTGCTGACCG GACACGCTCA GGCCTTCGGC
CGTGGAACGA TCACCGACAA CGCGACGCTG GTGGTCGATC AATCGACCAA CGCCACCCTC
GCCAACACGC TGGCGGGCAA CGGTGCGCTG ATCAAGCGCG GTTCCGGCTC GCTGAACCTG
ACGGGCAACA ACAGCCTGTC CGGTGCAACG ACAGTGCAAG CCGGTCGTCT GGCGGTAAAC
GGCAACCTGG GCAACTCCAT CGTCAGCGTG CAACAAGGCG CAACGCTGGG TGGCAACGGC
ACCGTCGGCG GCATCAACGT CGCTCAGGGC GGTGTGGTTG CGCCGGGCAA TTCGGTGGGA
CAACTGAACG TCAACGGTGA CGTAAACCTC GCTCAGGGCG CGGTTTACCA AGTGGAGTCG
GACGCCAACG GCAACGCAGA CCGTATCGTC GCCAGTGGCC GTGCGACGAT CAATAACAGC
ACGCTATCAC TGGTCGAAGG CGGCAACTGG CTGGCCGCCA GCCGCTACTC GATTCTCTCG
GCAGCCGGCG GCGTGAGTGG TGCATTTGCC GCCGTGCAAA CCAACTTCGC CTTCCTCACG
CCGACGCTGA ACTACACCGC GACCGATGTC GGACTGACGC TGGATCGCAA TGCCCAGCGC
TTCTCCAGCC TGGCGACCAG CGACAACGCA AGGGCCGTTG CGCAGGGCCT GGACAGTTCA
GGCGCAAACA ACGCGCTGTG GCGTCAGGTG GTGCAATCCG ACGCCTCCAC GGCACAAGCC
ACCTTCAAGG CGCTGTCCAA CGAACTGCAT GCATCGACCC AGTCCGCGCT GATCGAAGAC
AGCCGCCTGG TGCGCAACGC CATGAACGAC CGATTGCAGC AAGCGCAGTC CGCCCAGGCA
TTCGGCAGCA GCACACAAAC CCTCGCCGGC GATGCTTCGC GTGGCGTGGT CTGGACTCAG
GCCATCGGCG CAACCGGCAA GACCGAAAGC ACCCGCGACG TCTCGGGCCT CGACACCCGC
ACCAGCGGTT TGCTGTTCGG CGCGGACGTG CCGCTCGACG ACACTTGGCG CCTGGGCGCA
ATGGCCGGTT TCAGCAACAG CAGCTTCGAC CTGCGCCATG CATCGGGGTC CACCGACAGC
GACAACTACC ACCTGGGCGT CTACGCCGGA GCCAAATGGG GCCAACTGGG CCTGCGCCTC
GGCGCGGTGC GCACCTGGCA TGAACTGACC GCCAAGCGCA CGCTGGATCT GCCGGGCTCG
TCCGAGCATT TCAAGGAAGA CTACAAAGCG GCGACCAATC AGGTATTCGG CGAACTGGGT
TACGCCATCG ACATGGGCAA CGCACAGCTC GAACCCTTCG CCAACCTCGC GCATGTGCGG
CTGGACACCG ACGCCTTCGA TGAAAACAGC AACGCCATCC GCCTGGAGAA CAAAGCCCAG
GATAATCACA TTACCTTCAG CACCCTGGGC CTGCGTGCCG CGACTCACTT GAACGCCGGC
AGCGTCGCAA TCAAACCCAA CGCCACACTG GGCTGGCGTC GCGCCTATGG CGACGTGACG
CCAGAGAGCC GCGCAGCCTT CAGCGGCGGC AGCACCTTCG AACTCTCCGG CGCACCGATC
GCACGCAGCG CAGCGGTACT CGGCGCAGGT GTTGATCTGG GGTTGAGCGA CACGCTGAGC
GTTGGGCTGA GTTACAACGG GCAAGTGAGC AGCGATGCGT CTGATCAGAC GCTGAATGCG
CGGGTGACGT TGGCGTTTTA A
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| Protein sequence | MWTTGATWDT GTPTALGQSL LRRNLQIVVD RANSRTLAQE TAAYFDDRRD QSYSATSGLG
SLTAAYRAGA GAFTTITQFD DSNKTVKYDD KGNGAGSSTS ALGKVVDLVG AVRNDASTTP
AKSHYLYPRP WRQSLDGQSL AFVVAPSLRP AQSTTPTSDS GFPSGHTNAA YLSSYALAYA
IPERFSELML RASEIGDNRI EAGMHSPFDV MGGRITATYF AIDNLSNPAN AQLRADARAQ
ALNYFTAQCG GDVNNCMATI DPATDRTSQH ALDKALYTSR MTYGFDPVGP TNLAPVVPTN
AEVLLETRFP YLDASQRREI LATTEISSGY AVIDQSGGYG RLNLYAAGDG YAAFNSNVTV
NMNASLGGYN AIDAWRNDIS GSGALIKNGG GNLMLTGNNT YSGGTVINGG VLTGHAQAFG
RGTITDNATL VVDQSTNATL ANTLAGNGAL IKRGSGSLNL TGNNSLSGAT TVQAGRLAVN
GNLGNSIVSV QQGATLGGNG TVGGINVAQG GVVAPGNSVG QLNVNGDVNL AQGAVYQVES
DANGNADRIV ASGRATINNS TLSLVEGGNW LAASRYSILS AAGGVSGAFA AVQTNFAFLT
PTLNYTATDV GLTLDRNAQR FSSLATSDNA RAVAQGLDSS GANNALWRQV VQSDASTAQA
TFKALSNELH ASTQSALIED SRLVRNAMND RLQQAQSAQA FGSSTQTLAG DASRGVVWTQ
AIGATGKTES TRDVSGLDTR TSGLLFGADV PLDDTWRLGA MAGFSNSSFD LRHASGSTDS
DNYHLGVYAG AKWGQLGLRL GAVRTWHELT AKRTLDLPGS SEHFKEDYKA ATNQVFGELG
YAIDMGNAQL EPFANLAHVR LDTDAFDENS NAIRLENKAQ DNHITFSTLG LRAATHLNAG
SVAIKPNATL GWRRAYGDVT PESRAAFSGG STFELSGAPI ARSAAVLGAG VDLGLSDTLS
VGLSYNGQVS SDASDQTLNA RVTLAF
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