Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5185 |
Symbol | |
ID | 1186870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5901103 |
End bp | 5902308 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637396504 |
Product | acyl-CoA dehydrogenase family protein |
Protein accession | NP_794916 |
Protein GI | 28872297 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTCA ATCCACAGGC GCGCGACCAC GCAGCGCTGA TTACCAGTGA CGCGCAGGCC CTGCAAGTCG CTGGCGAACT GGCTTCGCAG TTCAAGACCG GCAGCGCCCA ACGCGACAGT GAGCGCCGTT TACCCCACGC CGAACTCGAC ATCTACAGCC AGTCCGGCTT GTGGGGCATC AGCGTGCCGA AAGCCTTTGG TGGCGCGGGC GTTTCAAACG TGACGCTGGC CAAGGTGATC CAGCTGATTT CCGAAGCCGA TGGCTCGCTC GGCCAGATTC CGCAGAACCA TTTTTACGCC CTTGAAGTGC TGCGCGTGAA CGGCAGCCCC CAGCAACAGG CGCGGCTGTA TGCCGAGGCG CTGGCAGGCG TGCGCTTCGG CAACGCGCTG GCTGAGCTGG GGACCAAAAC CGCACACGAC CGCACCACGC GTCTGACGCG CGATGGCGAC GGTTATCGCA TCAACGGCCG CAAGTTTTAC GCGACCGGCG CGCTGTACGC GCAACGTATT CCCACGTCGG TGGTTGACGA CGACGGCGTG CAGCAACTGG TGTTCGTCCC GCATGACAGC GAGGGGTTGA CGGTTATCGA TGACTGGAGC GGTTTCGGCC AGCGCACCAC CGGCAGCGGC TCGGTGGTCT TCGACAACGT GTACGTCAGC GCAGCTGAGG TAGTGCCATT CCAGAGCGCC TTCGAGCGGC CAACCACGGT CGGCCCGCTG GCGCAGATTC TCCATGCAGC CATCGACACC GGCATCGCCC GCGCCGCATT CGAGGACGCG CTGACCTTCG TTCGTACCCG CACCCGGCCA TGGATTGATT CGGGTATCGA AAAAGCCGTG GATGACCCGC TGACGCTGCA CAGCTTCGGC AGGCTCGGTA TTCGCCTGCA CGCCGCCGAA GCCCTGCTGG AACGGGCCGG GGAATTTCTT GATATCGCCC AGGCCGACAG CACTGCCGAG CACGTCGCCG CTGCCTCGAT CGCAGTGGCA GAAGCCCGCG CCATCAGCAC GGAGATTTCC CTGGCGGCGG GCAGCACACT GTTCGAACTG GCAGGCAGCC AATCGACCCT GGCCGAACAT GGCCTGGATC GCCACTGGCG CAACGCTCGC GTGCACACGC TGCACGATCC GGTGCGCTGG AAGTTTCACG CCATCGGCAA TTACTACCTG AACGACGCAA ACCCGCCATT GCGGGGGACG ATCTGA
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Protein sequence | MSFNPQARDH AALITSDAQA LQVAGELASQ FKTGSAQRDS ERRLPHAELD IYSQSGLWGI SVPKAFGGAG VSNVTLAKVI QLISEADGSL GQIPQNHFYA LEVLRVNGSP QQQARLYAEA LAGVRFGNAL AELGTKTAHD RTTRLTRDGD GYRINGRKFY ATGALYAQRI PTSVVDDDGV QQLVFVPHDS EGLTVIDDWS GFGQRTTGSG SVVFDNVYVS AAEVVPFQSA FERPTTVGPL AQILHAAIDT GIARAAFEDA LTFVRTRTRP WIDSGIEKAV DDPLTLHSFG RLGIRLHAAE ALLERAGEFL DIAQADSTAE HVAAASIAVA EARAISTEIS LAAGSTLFEL AGSQSTLAEH GLDRHWRNAR VHTLHDPVRW KFHAIGNYYL NDANPPLRGT I
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