Gene PSPTO_5176 details

Gene Information

• Locus tag: PSPTO_5176
• ID: 1186861
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5892197
• End bp: 5892763
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637396495
• Product: RNA polymerase sigma-70 family protein
• Protein accession: NP_794907
• Protein GI: 28872288
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTCCTCGC ACGAATCTCT ATTTGATTAC GAAGCTACGT TGCAGGCCTG CGCTCGCGGT 
GAGAAACAGG CCTTGCAGCG TCTCTATCTA CAGGAAAGCG CCCGGTTGCT CGGCGTCGCC 
CAGCGCCTGG TACGTGACAG CGCACTGGCC GAAGACATCG TGCATGACGC CTTCTTGAAA 
ATCTGGACCC ACGCGGCCAG CTTCGACGCG TCGCGCGGTT CGGCACGTGG CTGGATATTC 
AGCGTGACCC GGCACCTTGC GCTGAACACA CTGCGCAACA CGGCACGCGA GGTGCGTGTC 
GAGGATGATG GCAGCGACGA CCATCACGAA CAGGCAACCC TGGAAGGCTG GCAGGAAACC 
GGGGACGCTT TCGATTGGCG GGTCAATCCA GGACGGATGA TTTCATGCAT GGAGCAACTC 
GAACCGGTAC GCCGAAACTG TATTTTTCAC GCTTACGTAG ACGGCTATTC GCATCAGGAA 
ATCGCGCAGA AGATCGGCGC GCCATTGGGT ACGGTCAAAG CCTGGATCAA GCGCAGCCTG 
ACGGCTTTGC GGGAGTGCAT GGGATGA 

 

Protein sequence

MSSHESLFDY EATLQACARG EKQALQRLYL QESARLLGVA QRLVRDSALA EDIVHDAFLK 
IWTHAASFDA SRGSARGWIF SVTRHLALNT LRNTAREVRV EDDGSDDHHE QATLEGWQET 
GDAFDWRVNP GRMISCMEQL EPVRRNCIFH AYVDGYSHQE IAQKIGAPLG TVKAWIKRSL 
TALRECMG