Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5135 |
Symbol | |
ID | 1186820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5844940 |
End bp | 5845683 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396455 |
Product | staphylococcal nuclease-like protein |
Protein accession | NP_794867 |
Protein GI | 28872248 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCGA TTTGGCTGTC TGGTGCTCAG GCCTTCTGCC CGGCACCTGC TTCGTTGCCG GTTGCTCACG TGCAGCGCGT GGTAGATGGC GACACGCTAC GCCTGACCGA CGGCCGCAAT GTGCGCATGA TCGGCCTCAA TACCCCTGAA ACCGGCAAGA AAGGCCGCTC TGCCGAGCCA TTCGCCGAGG CCGCCAAAAA GCGCCTGCAA GCGCTGGTGG ACAAAAGTGG CGGGCAAATC AGTCTGCGTG TCGGTCAGCA GGGCAAGGAT CATTACGGCC GCACGCTGGC CAACGTTTAT GGCCGCAATG GCGACAATCT TGAAGCGCAG TTGCTCAGTG AAGGGCTGGG CTATCTGGTC GCTGTCGCGC CCAATGTGGC ACTGGTCGAC TGCCAGCAAA GCGCCGAGCG TGAGGCGCGT CAGGCCCGGC GCGGGGTGTG GCGCAATTCG CAGGTGCAGC CTTCCGACAA ACTACGCAAA GGCGGCTTTG CAGTGGTGTC TGGCAAGGTC AGGAGCGTGC AGCGTAATCG CGGTGGCATC TGGATCGAAC TACACGGTTC GGTGGTGCTG CGCGTTGCCC CTGATCAGGC GTTCAGGTTC GATATGGCGG CGCTTGAGCG TCTCAAGGGT CGGCAAATTG AAACGCGCGG CTGGGTGATT GATCGTTCTG GCCGAGGTGG CTTGAAGGCC GGGCAGTCGC GCTGGATGAT CGCGTTGAGC CATCCGGCAA TGCTAAGCCT TTAG
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Protein sequence | MSAIWLSGAQ AFCPAPASLP VAHVQRVVDG DTLRLTDGRN VRMIGLNTPE TGKKGRSAEP FAEAAKKRLQ ALVDKSGGQI SLRVGQQGKD HYGRTLANVY GRNGDNLEAQ LLSEGLGYLV AVAPNVALVD CQQSAEREAR QARRGVWRNS QVQPSDKLRK GGFAVVSGKV RSVQRNRGGI WIELHGSVVL RVAPDQAFRF DMAALERLKG RQIETRGWVI DRSGRGGLKA GQSRWMIALS HPAMLSL
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