Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5134 |
Symbol | |
ID | 1186819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5843502 |
End bp | 5844770 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637396454 |
Product | malic enzyme family protein |
Protein accession | NP_794866 |
Protein GI | 28872247 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0185619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGATT TGAAAACTGC CGCGCTCGAA TACCATGCCA ATCCTCGTCC GGGGAAGCTG AGCGTCGAAC TCACCAAGCC GACCGCAACC GCTCGTGACC TGGCTCTGGC CTACAGCCCT GGCGTTGCTG AACCCGTGCG TGAAATTGCC CGTGACCCCG AGCTGGCTTA CAAGTACACC GGCAAAGGCA ACCTGGTAGC AGTTATTTCC GATGGCACCG CGATTCTCGG CCTCGGCGAT CTGGGCCCAT TGGCCTCCAA GCCGGTTATG GAAGGTAAAG GGGTTCTGTT CAAGCGTTTC GCCGGTATCG ACGTTTTCGA TATCGAAGTC GATTCCGAAA GCCCGCAAGC GTTCATCGAC ACCGTCAAGC GTATCTCCAT CACCTTCGGT GGCATCAACC TGGAAGACAT CAAGGCACCT GAGTGCTTTG AGATCGAGAA AGCACTGATC GAACAGTGCG ACATCCCGGT TTTCCACGAT GACCAGCACG GCACCGCTAT CGTGACCGCA GCCGGCATGA TCAACGCACT GGAAATCGTC GGCAAAAGCC TTGAGTCCGC GAAGATCGTC TGCCTGGGCG CTGGCGCAGC TGCCATCTCT TGCATGAAGC TACTGGTGAG CATGGGCGCG AAGATCGAAA ACATCTTCAT GGTTGACCGT ACCGGCGTGA TCCACTCCGG CCGTACCGAC CTGAACCAGT ACAAGGCGGT GTTCGCTCAC GCCACCGAGA AGCGCTCGCT GACCGATGCA CTGGATGGCG CTGATGTATT TGTGGGCTTG TCCGGTCCTA ACCTGCTGAG CGCTGAAAAT CTCAAATTGA TGGCCAAGGA CCCGATCGTG TTCGCCTGCT CGAACCCGGA CCCGGAAATC TCCCCGGAGC TGGCTCACGC CACCCGCAGC GACGTGATCA TGGCGACCGG CCGTTCGGAC TACCCGAACC AGGTCAACAA CGTGCTGGGC TTCCCGTTCA TCTTCCGTGG TGCACTGGAC GTTCGCGCCA AGCGCATCAA CGAAGAGATG AAAATCGCCG CAGCCAACGC CCTGCGTGAA CTGGCCAAGC TGCCGGTTCC TCAGGAAGTC TGCGACGCTT ATGGCGGTAT CAAGCTGGAA TTCGGTCGTG AATACATCAT CCCGAAACCA ATGGACACCC GTCTGCTGGG CCTGATCGCC GACGCGGTTG CCAAGGCTGC CATCGAAAGC GGCGTTGCGA CCCTGCCGTA TCCGAAGCAC TACCCGCTGA CCAGCGTGGA CGACGTGTTC AACGGCTGA
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Protein sequence | MSDLKTAALE YHANPRPGKL SVELTKPTAT ARDLALAYSP GVAEPVREIA RDPELAYKYT GKGNLVAVIS DGTAILGLGD LGPLASKPVM EGKGVLFKRF AGIDVFDIEV DSESPQAFID TVKRISITFG GINLEDIKAP ECFEIEKALI EQCDIPVFHD DQHGTAIVTA AGMINALEIV GKSLESAKIV CLGAGAAAIS CMKLLVSMGA KIENIFMVDR TGVIHSGRTD LNQYKAVFAH ATEKRSLTDA LDGADVFVGL SGPNLLSAEN LKLMAKDPIV FACSNPDPEI SPELAHATRS DVIMATGRSD YPNQVNNVLG FPFIFRGALD VRAKRINEEM KIAAANALRE LAKLPVPQEV CDAYGGIKLE FGREYIIPKP MDTRLLGLIA DAVAKAAIES GVATLPYPKH YPLTSVDDVF NG
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