| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5030 |
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| Symbol | |
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| ID | 1186715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5727198 |
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| End bp | 5733161 |
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| Gene Length | 5964 bp |
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| Protein Length | 1987 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396351 |
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| Product | sensor histidine kinase/response regulator |
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| Protein accession | NP_794763 |
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| Protein GI | 28872144 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATC GTCACGATTA CGTGGCCCTT GAATGGCTCA AGGGCGAGAT CGCCGAAACG
CTGCGGCAGG CCCGCCATGC GCTGGACGAA TTCATCGAAG ATCCGGCCAA CGGCGCGGCG
ATGGCCGAGT GCCTGAACCT GGTGCATCAG GTTCACGGCA GCCTGCAAAT GATCGAATTC
TATGGCGCGG CGTTACTGGC CGAGGAAATC GAGCAACTGG CGCTGGCAGT TCAGCAAAAT
CGCGTCAGCC ATCCGGTCGA GTCCGAGCAG CTTTTGATTC AGGCCATGAG CCAGTTGCCG
CTGTACCTGG AGCGTATTCA CTCCGCGCGC CGTGATCTGC CGCTGGTGGT TTTGCCGTTG
CTCAATGACC TGCGCAGTGC GCGGGGTGAA AGCCTGCTCT CGGAAACCAG CCTGTTCGCC
CCGCAACTGG TCGTCGTCCC AGCCCTTGAT GAGGAAGAAC TGGCGCGACG CAATACCCCG
GAACTGCCAG GCCTGCTGCG CAAGCTGCGC CAGACCTTGC AGGCAGCGCT GGCGGGCCTG
ATGCGCGAGC AGGGCGTACA GACCCAGCTC GGTTACATGG CCAAGGTCTT CGCCCGGCTC
GAGCAATTGT GCGAAGACGC GCCGCTCGGT CCGCTCTGGC GAATTTCCTC GGCGCTGGTC
GAGACCATGC TCAACGGCAA CTTCACCAAT AGCCCGGCCC TGCGCAGCCT GTTGAAAGAC
GCTGACAAGG AACTCAAGCG GCTGGCCGAG CAGGGCGTGG CGGGCATCAA TCAGCCTGCG
CCGGAAGAAT TGCTGAAAAG CCTGCTGTTC TACATCGCCA AGTCCGACAG CCTGGCGCCG
AAAATGCTTG ATCTCAAAGA TCAGTACGCA CTGGCCGACG CCTTGCCCGG CAACGACGTG
GTCAATGAAG AGCGGGCGCG CATGGCCGGG CCGGACCGCG ATGCCATGCG CTCGGTGATC
GTGGCGTTGT GCGAAGGGCT GGTGCGGGTC AAGGAACGGC TCGATGTGTT TGTGCGCGGT
GACCGCCAGC ATGTCAGCGA GCTCAACGCC TTGCTGCCGC CGCTGCGACA GATCGCCGAC
ACCTTGGCGG TGTTGGGCTT TGGCCAGCCG CGCAAGGTGA TCATCGACCA GCTTTCGGTT
GTTCTGGGGC TGGCGCAGGG GCAGCGCGAG CCCAGCGACG GCGCGCTGAT GGATGTGGCG
GGCGCGTTGT TGTACGTCGA ATCGACCCTC GCAGGGATGG CCGGTAATAA CGAACAGTCG
AGCCGCGAAG AAAGCCGCCT GCCGACCACC GACCTGACGC AGATTCATCA ACTGGTGATT
CGCGAGGCCC GTAACGTCTT GCAGCAAGCC AAGGACGTGA TCCTCGACTA CATCGATGGC
GAATGGGACC GCCAGCGGCT TGACCCGCTG TGCGCGCTGA TCGTACAGGT TCGCGGTGCC
CTGGCGATGA TCCCGCTGGC GCGTGCGGCG AGCCTGCTGG CTGCCTGTAA CGAATACATT
CAGGAACACC TGCTGGTGGA TGAAACCCGA CCCACCGGCG TGCAGCTCGA CTGTCTGGCC
GACACCATTA CCGGGATCGA GTACTACCTG GAGCGCATGC TCGAAGACCA CGAAGCGCCT
GGCGATCAAG TTCTCGACAT GGCCCAGCAA AGCCTCGCGC GTCTGGGTTA TACCCCCGCA
GCGGATACGC TTGAAGTGCC GCTGCTCGAC GAGATCATCA CTCAGGACGA ACTGCTGGAA
CTGGACGACC GCAAGGCCTT GGTCAGCCCG ACGCAAACCA TTGCACAAGT GCTCGCCAGC
CCGATGTCGG CGGTCAACCC TCCGGCGCGC AACGTGCCCA CCAGCCTGCT GCCGCCTTCG
CCTGACGAAG AGGCGGTGGA TGAGGAGCTG CGCGAAGTTT TTCTGGAAGA GGCCGACGAA
GTCCTCGACG CGCTGCGTGA GTATCTGCCG CGCTGGTTTG CCTCGCTCGG CAGCGGCGGT
CACTGGGACA GCACGGCACT GACCGAGGTG CGCCGGGCGT TTCATACCCT CAAGGGCAGC
GGCCGTATGG TGCGCGCGCT GATCCTCAGT GAACTGGCTT GGTCGGTGGA AAACCTGCTC
AACCGGGTGC TGGAAGGCGA CGTACTTCCG GGTTTGGAAG TGCAGCAACT GATGGGTGAA
GTGTTGGCGC TGCTGCCCTC GGTGATACGC GACTTCGCTG ATGACGCGCA GTGCCAGCGC
AACGACGTCG ACCTGCTGGC GGCCCGCGCC CACGCGCTGG CCAATGGTCT TGAAGCACCT
TCTTTGTCTG TTGCCGACTC GCATGCGCCA GGCGAAGTGC TGGATCCGCA GTTGCTGGAA
ATTTTCCGCC AGGAAGCGCT GGGGCATTTG AATACCCTCA GCCGCTTTCT CGACAACGCC
GAACAGTCCG CATCGCCTTC GATCAGCGAC GCGGTGCTGC GCGCACTGCA CACGCTCAAA
GGCAGCGCGC ACATGGCTGG TGTGCTGCCG ATTGCCGAAC TGGCCAGCCC GCTCGACCAG
TTGGTGCGAG AATACAAAGC CAACCTGATC GACATCGGCG CGCCCGAACT CGACGTGCTG
CGCCGCGCCG AACCGCTGCT GCGTATGGGG CTGGAGCAGC TGGACACGAC TCCGCTGGGC
GAGATTGCGG GTGCGGCGCA GTTGATCGAT GCTGCCTTTT CGCTGCTCAA TGAGCGCCTC
ACGGCGGTGC TGCGTGACTC GGACAGCGGC TTGCGGATCA AGCGTAACCC CACGCTGCTG
GCGGGCTTTC TGGCCGAAGG CATGGACATC GTGCTCGATG CCGAAAACCT GTTGCGGCGC
TGGCGTCAGC ATCCCGGTGA GCGACAGGAG CTTAGCGCGC TGCTCGATGA GCTGACCACG
CTGGGGCATG GCGCGCACCT GGCCGATTTG CCGCAGGTCG ATGAGCTGTG CGAGGCCTTG
CTCGACTTGT ATGGCGCTGT CGAAGAAAGC AGCCTGGCGG TCAGCGAGCG CTTTTTCGAC
GTAGCCGAAC AGGCCCATGA AGCCTTGATC AATATGCTTG ATCAGGTTGC GGCCGGCCAG
AATGTCGAGC CACGCCCCGA GTGCGTGCGC GCCTTGAACG ATCTGCTGGA TCAGGCGCTG
GACCCGTCGG CGACCGGGCT GGTCAAGAGC GATGGCCACC GTACCCTGAG TGTTACAGAA
CTCAATGCGG CCACCGAGCA ACTGGCCCGT GAGGCCGTGC CGCCGGAGGT TTTCAGTCCG
GACGACGAGA TTGTCGAGAT ATTTCTGGAG GAAGCCGTCG ATATCCTCGA CAGCGCAGGG
CAAGCCCTGC AACGCTGGCT GGCTGATCCG GAAAACCCGG CACCGTTGAG TTCGCTGCAA
CGCGACCTGC ACACCCTCAA GGGCGGTGCG CGGATGGCCG AAGTGGTTGA AGTGGGCGAC
CTTGCCCACG AGCTGGAAAA CCTTTACGAA GGCTTGATCG ACCGACGCTT CAACCACTCA
CCGACGCTGG CCGAGTTGCT GCACAAGAGT CACGACCACC TGGCGATTCT GCTGGAGCAG
TTGTATCAGC ACGCAGCGCT CAGCGATCCC TCGGCGCTGA TCGAGGCGTT GCGCGGCTGC
CGCACGGTCG AGAGCGCAGT GCCCGAAGCG CCATTATCGT CCCAGGCCAG CGCAGACCTG
CCTGAGCATG ACACCGAGTT GCGTGAAGTC TTCCTTGAGG AAGGTTTCGA CATCATCGAA
AGCTCCGGCG CGGCACTGGC CCGCTGGCAG GCTGACCCGC ACAACCTGCT GGAGGTCGAG
AACCTGCTGC GTGACCTGCA CACCCTCAAG GGTGGCGCAC GGATGGTCGA AATTGCTCCG
ATAGGCGACC TTGCTCACGA GCTGGAAACG CTTTACGAAG GGCTTTGCGC GGGCAGCATG
CAGGCTGATC CTCTGATGAT CAGCCTGTTG CAAAGCGGCC ACGATGTGCT GGCCGACATG
CTCGATGCGG TGCGCTCTGA AAAGCCGCTG TCTGACGCAA CCCTGCTGAT CGAAAACATC
CGCCGGCTGG CCAGCGATGG CCCGACGGGT GGGCAGTTTG TTGCGCAGGC CATCGAGTCC
GGCCCGGAAC CGGTTGTGGC GGTCACGCCT GTTGTTGACG GCGAGGGCGA GCGCAGTGGC
CCGGAAATGG TCAAGGTGCC TGCCGAGCAA CTGGAAGGCC TGGTCAATCT GGCGGGCGAA
ACATCCATCT TCCGGGGGCG CATTGAGCAG CAGATTATCG ATTCGCAGGT CACGCTGGTA
GAAATGGAAA CCACCATCGA GCGGATGCGC GACCAGTTGC GTCGTCTGGA TATGGAAACC
CAGGGGCGCA TTCTCAGCCG TGAGCAGGTT CAGGCCGAGC GGTTGGGTTA CGAAGAGTTC
GACCCGCTGG AAATGGACCG CCACTCTCAG TTGCAGCAGT TGTCGCGCGC CTTGTTCGAG
TCTGCGTCCG ACCTGATGGA CCTCAAGGAA ACCCTTGGCG CGCGAGCCCG CGATGCCGAA
ACACTGCTGT CGCAACAGGC CCGGGTCAAC ACCCAGTTGC AGGAAGGCCT GATGCGCACG
CGCATGGTGC CGTTCGAGCG ACTGGTGCCG CGTTTGCGTC GCGTGGTGCG ACAGGTGGCC
TCGGAACTGA ACAAGAAAGT GCATTTCGAG GTCGGCAATG CCGATGGCGA GATGGACCGC
AACGTGCTGG AGCGGATGGT CGCGCCACTG GAGCACATGC TGCGCAACGC CGTCGATCAC
GGCCTTGAAA GCACCGAAAA ACGTATCGCT GCTGGCAAAC CGGAACAGGG TCGCATCAAC
CTGGAGCTGA TGTACGAAGG CGGCGACATG CTGATCGAGC TGAGCGATGA CGGCTCGGGC
GTCGATCTGG CGGCCGTGCG CCGCAAGGCC ATCAAGCGCG GCATGATCCA CCCGGACGCC
GACCTGGCCG ATCATGAAGT GTTGCCGTTC ATTCTGCAGG CGGGGTTTTC CACCAGCGAG
ATCATCACCC AGATTTCCGG GCGAGGCGTG GGCATGGACG TGGTGCATGC CGAGGTCAAG
CAGTTGGGCG GCTCGATGGT CATCGACTCG GTGCCTGGCA AGGGCACGCG CTTTCGTATT
CGTCTGCCGA TTTCGGTGTC GGTCAACCGG GCGCTGATGG TGACCTGTGG CGAAGAGCAA
TACGCAGTGC CGCTCAACAC CGTCGATGGC ATCGTGCGCG TCATGGCCAA CGAGCTGGAC
GGTTACTACC AGACCAGCCC GCCGCGTTAT CAGTACGGCG GGCGCAGTTA CGAGTTGCGT
TATCTGGGTG AGTTGCTGGG CAACAGCCCG CCACGGTTGG TCGGGCAATT GCAGCCGTTG
CCGGTATTGC TGGTGCATTT GCAGGATCAG TGGGTGGCGG TGCAGGTCGA TGCGCTGGCC
GGCTCGCGGG AAATTGTGGT CAAGAGCCTT GGCGCGCAGT TTTCCAGAGT GCAGGGCATT
TCCGGCGCGA CCATTCTGGG TGATGGCCGT GTGGTTCTGA TTCTTGATCT GATGGCGCAG
CTTCGCACCT TGCAGGGCCT GCCTTTCAGA GGCTTCACGC CAGCAGCGTA TAACGAGATC
GAGCACGCCA GGCCATTGCT GGTGATGGTG GTGGACGATT CGGTGACGGT GCGTAAAGTG
ACCAGTCGGT TGCTTGAACG CCACGGCATG CATGTGCTGA CCGCCAAGGA CGGGATCGAC
GCCATGAGCC TGTTGCAGGA GCACACGCCG GACATCATGT TGCTGGATAT CGAAATGCCG
CGCATGGACG GCTTTGAAGT GGCCAGCCAG ATCCGCCAGG ACGAACAGCT CAAGGAACTG
CCGATCATCA TGATCACCTC ACGCTCCGGC CAGAAACACC GCGACCGGGC CATGGCGCTG
GGCGTCAACG AGTACCTGAG CAAGCCTTAT CAGGAGAACG TGCTGCTGGA AAGCATCACT
TACTGGAGTC AGGTCGATGT CTGA
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| Protein sequence | MADRHDYVAL EWLKGEIAET LRQARHALDE FIEDPANGAA MAECLNLVHQ VHGSLQMIEF
YGAALLAEEI EQLALAVQQN RVSHPVESEQ LLIQAMSQLP LYLERIHSAR RDLPLVVLPL
LNDLRSARGE SLLSETSLFA PQLVVVPALD EEELARRNTP ELPGLLRKLR QTLQAALAGL
MREQGVQTQL GYMAKVFARL EQLCEDAPLG PLWRISSALV ETMLNGNFTN SPALRSLLKD
ADKELKRLAE QGVAGINQPA PEELLKSLLF YIAKSDSLAP KMLDLKDQYA LADALPGNDV
VNEERARMAG PDRDAMRSVI VALCEGLVRV KERLDVFVRG DRQHVSELNA LLPPLRQIAD
TLAVLGFGQP RKVIIDQLSV VLGLAQGQRE PSDGALMDVA GALLYVESTL AGMAGNNEQS
SREESRLPTT DLTQIHQLVI REARNVLQQA KDVILDYIDG EWDRQRLDPL CALIVQVRGA
LAMIPLARAA SLLAACNEYI QEHLLVDETR PTGVQLDCLA DTITGIEYYL ERMLEDHEAP
GDQVLDMAQQ SLARLGYTPA ADTLEVPLLD EIITQDELLE LDDRKALVSP TQTIAQVLAS
PMSAVNPPAR NVPTSLLPPS PDEEAVDEEL REVFLEEADE VLDALREYLP RWFASLGSGG
HWDSTALTEV RRAFHTLKGS GRMVRALILS ELAWSVENLL NRVLEGDVLP GLEVQQLMGE
VLALLPSVIR DFADDAQCQR NDVDLLAARA HALANGLEAP SLSVADSHAP GEVLDPQLLE
IFRQEALGHL NTLSRFLDNA EQSASPSISD AVLRALHTLK GSAHMAGVLP IAELASPLDQ
LVREYKANLI DIGAPELDVL RRAEPLLRMG LEQLDTTPLG EIAGAAQLID AAFSLLNERL
TAVLRDSDSG LRIKRNPTLL AGFLAEGMDI VLDAENLLRR WRQHPGERQE LSALLDELTT
LGHGAHLADL PQVDELCEAL LDLYGAVEES SLAVSERFFD VAEQAHEALI NMLDQVAAGQ
NVEPRPECVR ALNDLLDQAL DPSATGLVKS DGHRTLSVTE LNAATEQLAR EAVPPEVFSP
DDEIVEIFLE EAVDILDSAG QALQRWLADP ENPAPLSSLQ RDLHTLKGGA RMAEVVEVGD
LAHELENLYE GLIDRRFNHS PTLAELLHKS HDHLAILLEQ LYQHAALSDP SALIEALRGC
RTVESAVPEA PLSSQASADL PEHDTELREV FLEEGFDIIE SSGAALARWQ ADPHNLLEVE
NLLRDLHTLK GGARMVEIAP IGDLAHELET LYEGLCAGSM QADPLMISLL QSGHDVLADM
LDAVRSEKPL SDATLLIENI RRLASDGPTG GQFVAQAIES GPEPVVAVTP VVDGEGERSG
PEMVKVPAEQ LEGLVNLAGE TSIFRGRIEQ QIIDSQVTLV EMETTIERMR DQLRRLDMET
QGRILSREQV QAERLGYEEF DPLEMDRHSQ LQQLSRALFE SASDLMDLKE TLGARARDAE
TLLSQQARVN TQLQEGLMRT RMVPFERLVP RLRRVVRQVA SELNKKVHFE VGNADGEMDR
NVLERMVAPL EHMLRNAVDH GLESTEKRIA AGKPEQGRIN LELMYEGGDM LIELSDDGSG
VDLAAVRRKA IKRGMIHPDA DLADHEVLPF ILQAGFSTSE IITQISGRGV GMDVVHAEVK
QLGGSMVIDS VPGKGTRFRI RLPISVSVNR ALMVTCGEEQ YAVPLNTVDG IVRVMANELD
GYYQTSPPRY QYGGRSYELR YLGELLGNSP PRLVGQLQPL PVLLVHLQDQ WVAVQVDALA
GSREIVVKSL GAQFSRVQGI SGATILGDGR VVLILDLMAQ LRTLQGLPFR GFTPAAYNEI
EHARPLLVMV VDDSVTVRKV TSRLLERHGM HVLTAKDGID AMSLLQEHTP DIMLLDIEMP
RMDGFEVASQ IRQDEQLKEL PIIMITSRSG QKHRDRAMAL GVNEYLSKPY QENVLLESIT
YWSQVDV
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