| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5023 |
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| Symbol | |
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| ID | 1186708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5717662 |
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| End bp | 5719458 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396344 |
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| Product | sodium/hydrogen exchanger family protein |
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| Protein accession | NP_794756 |
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| Protein GI | 162533072 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3263] NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAGCT TTCGCGCTTT TCGCTTCACT TTCGTTTTCT ATGGAGTACC GCCCTTGGAC
GCCACCACCA TCAACAGCCT GTTCCTGATC GGCGCGTTGC TGGTAGCCGC AAGCATCCTG
GTCAGTTCTC TCTCATCGCG CCTCGGCATC CCTATCCTGG TCATCATTCT GGCCGTGGGC
ATGGTGGCGG GCGTGGATGG CGGCGGGATC ATCTTCGATA ACTACGCTAC CGCCTACCTG
GTCGGCAATC TCGCGTTGGC CGTCATCCTG CTCGACGGCG GCCTGCGAAC GCGGGTGGCC
AGTTTTCGGG TAGCGCTGTG GCCGGCCTTG TCGCTGGCAA CGGTGGGCGT GTTGATTACC
ACCGTATTGA CCGGCATGGT CGCCGCGTGG CTGTTCAACC TGAGCGTTAT TCAGGGCTTG
CTGATCGGCG CCATTGTCGG TTCCACAGAC GCCGCAGCGG TGTTCTCGCT GCTCGGCGGC
AAAGGCCTGA ACGAGCGTGT CACCGCAAGC CTTGAGATCG AGTCGGGGAG CAACGATCCC
ATGGCGGTGT TCTTGACCGT GACCCTGATC GGCATGCTCG CCAGCGGCCA GACCGGTCTG
CATTGGGGGC TGCTGGGGCA CCTGATTCAG GAGTTTGGCA TCGGCAGCTT CATCGGCCTG
GGTGGCGGCT GGATCCTGCT GCAACTGGTC AACCGTATCA ATCTGGCCGC CGGGCTGTAC
CCGATTCTGG TCATCGCGGG GGGGCTGGCG ATCTTTGCCC TGACCAACGC CATTCATGGC
AGCGGTTTTC TTGCGGTGTA CCTGTGCGGC CTGGTGCTCG GCAACCGGCC GATCCGCAGC
CGCCACGGCA TTCTGCACAT GCTCGACGGC ATGGCCTGGC TGGCGCAGAT CGGCATGTTT
CTGGTGTTGG GCCTGCTGGT CACACCGCAC GACCTGCTGC CGATTGCGAT ACCGGCGCTG
GGCCTGGCGC TGTGGATGAT TCTGGTCGCA CGCCCGTTGT CGGTGATGGT CGGTCTGCTG
CCGTTCAAGG CGTTTCATGG TCGCGAAAAG GCGTTCATTG CCTGGGTCGG CCTGCGTGGG
GCGGTCCCGA TCATTCTGGC AGTGTTCCCG CTGATGGCCG GGCTGCCCAA CGCGCAACTG
TATTTCAACC TCGCCTTCTT CATCGTGCTG GTTTCGCTGC TGCTGCAAGG CACCAGCCTG
CCGTGGATGG CCAAGCTGCT GAAAGTGACG GTTCCGCCAG ACCCCGCGCC TATTTCCCGG
GCTGCGCTGG AGGTGCACGT CACCAGCGAA TGGGAGCTGT TCGTCTACCG GCTGGGCGCT
GAAAAATGGT GCATCGGTGC GGCGCTGCGC GAATTGAAGA TGCCGGAAGG CACACGGATT
GCCGCACTGT TCCGCGGCCA GCAGTTGCTT CACCCGTCCG GCAGTACGAC CCTGGAAGTG
GGTGACCTGC TGTGTGTGAT CGGCCATGAA CACGATCTTC CTGCGCTGGG CAAACTGTTC
AGCCAGGCAC CGCAACGCGG TCTGGACCTG CGCTTTTTCG GCGATTTCGT GCTCGAAGGC
GATGCGCGAC TGGGCGAAGT GGCGGCGCTG TACGGCCTGA AACTCGACGG CATCGACCCC
GGCATGCCGC TCAGCCAGTT CATTGTGCAA AAGAATCGCG GCGAGCCTGT GGTGGGTGAC
CAGATTGAAT GGAACGGCAC TATTTGGACC GTTGCCGTGA TGGACGGGAA CAAGATCCAG
AAAGTCGGCG TCAAATTCCC CGAAGGAACC CGCCCGGGCC CCGGACTGTT CCTTTAA
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| Protein sequence | MVSFRAFRFT FVFYGVPPLD ATTINSLFLI GALLVAASIL VSSLSSRLGI PILVIILAVG
MVAGVDGGGI IFDNYATAYL VGNLALAVIL LDGGLRTRVA SFRVALWPAL SLATVGVLIT
TVLTGMVAAW LFNLSVIQGL LIGAIVGSTD AAAVFSLLGG KGLNERVTAS LEIESGSNDP
MAVFLTVTLI GMLASGQTGL HWGLLGHLIQ EFGIGSFIGL GGGWILLQLV NRINLAAGLY
PILVIAGGLA IFALTNAIHG SGFLAVYLCG LVLGNRPIRS RHGILHMLDG MAWLAQIGMF
LVLGLLVTPH DLLPIAIPAL GLALWMILVA RPLSVMVGLL PFKAFHGREK AFIAWVGLRG
AVPIILAVFP LMAGLPNAQL YFNLAFFIVL VSLLLQGTSL PWMAKLLKVT VPPDPAPISR
AALEVHVTSE WELFVYRLGA EKWCIGAALR ELKMPEGTRI AALFRGQQLL HPSGSTTLEV
GDLLCVIGHE HDLPALGKLF SQAPQRGLDL RFFGDFVLEG DARLGEVAAL YGLKLDGIDP
GMPLSQFIVQ KNRGEPVVGD QIEWNGTIWT VAVMDGNKIQ KVGVKFPEGT RPGPGLFL
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