| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5014 |
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| Symbol | |
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| ID | 1186699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5698929 |
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| End bp | 5701088 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637396335 |
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| Product | response regulator/sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_794747 |
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| Protein GI | 28872128 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACAC AGAGAAGCAG CATGGAACGC GTGCCAACCC AACCTCATGA TGGCTCTTCG
GTTTTACTGG TAGTAGACGA TTACCCGGAA AATCTGGTGA CGATGTGCGC CGTTCTGCAA
AGAACGGACT GGCACATCGT GACTGCAAGC TCAGGAATCG AAGCACTGAC AGTGCTTCTG
GAACAGGAAG TCGACCTGGT TCTGCTGGAT GTGCAGATGC CGGGTATGGA CGGTTTCGAG
GTTGCACGCC TGATGCGTGG CAGCCAGCGT ACCCGTCTTA CGCCGATCAT TTTTCTCACG
GCCAATGAGC AGACTCAGGA TGCCGTGCAG AAGGGCTATG CCAACGGTGC GACGGATTAC
CTGTTCAAGC CCTTCGACCC CAATGTACTC AAGCCCAAGG TGCAGACCCT GCTTGAGCAG
CAGCGCAACC GTCGTGCGCT GCAACAATTA TCGATGGAGC TGGAATCGGC TCGTGCATTC
AACGCGTCAG TGCTGGCCAA CGTGGCCGAA GGCATTCTGG TGGTCGATGA AGCGGGCAAT
ATCAGCTTCG CCAACCCGGC CATCTGCCAG TTGTTGAACG CCTCGGTCGA TCAATTGCGC
GGAACGCAGG TGCTCGACTA TGTCATCGAG CCGCAAGTCA GCAGTTGGCT GGAGTCGGGT
TTCTACCAGC ACTATCGCAA GGCCGACACT TATCGCGTAC ACGACGCCAT CCTGCGTACC
GCACAGGGTT CGCAATTACC GGTGGCGCTG TCATGCGCGG CGCTGCCTGC CGAACAGAAG
GCGATGGTGT TGACGGTGCT CGACATGTCG GTGGTGCGTG ATCTTTATCA GCAACTGGAA
AAGCAGGCGG TTACCGATGC CTTGACCGGT TTGCTCAACC GGCGCGGGCT GTATCAGGCG
GTTGAAAGCA TGCTGTTGCG CAACGAGCGT GCAGACAAAT ACCTGGTCGT GCTGTTCATG
GACCTGGACG GCTTCAAGCA GATCAATGAT GCCCTGGGCC ATGATGCCGG CGATCAGGTG
TTGCTCTGGG TCGCCGAGCA GTTCAAGGAC AGCATGCGGC CCTATGACGT ACTGGCGCGT
ATCGGTGGCG ACGAATTCAC TGTGGTGATC GACGGGCTTG ATTACCCCGA ACAGGCGGCC
AAAATCGCCG AAAAGCTCAT TGAACGTGTG TCCGGGCGGC GGCAAGTCAA CGGTGTCGAC
ATCACCCTTG GCGCCAGTGT CGGGATTGCC ACCTTCCCCG ATTGCGGCTC GAATCTGGAC
GGTTTGTTAC GTGCGGCAGA TATCGCCATG TACGAAGCCA AGCGTGCCGG GCGTCAGCAA
TACCGGTTCT ACGACCAGAA CATGAACGGC CGCGCCCGCT CCAGGTTGAT GCTTGAAGAG
AGTGTGCGCA CGGCCATCGA CGGCAAGGAC TTTTCGGTGG TGTATCAGCC GCAGATCCAC
GTCGGCGACG GTCGGCTGCG CGGTTTCGAG GCGCTGTTGC GCTGGCAGCA CCCGGCGGTG
GGCGAAGTGC CTCCGGCGTT GTTCATTCCC TTGCTCGAAG AAACCCGACT GATTAACCGG
CTGGGTGGCT GGATCTTCGA TCAGGGCGCC GAGCAGCGTC AGGCATGGAA CGGCGTGTTT
GCCCCTGATG TGGTGCTGAG CGTGTGCGTC AGCCCCACAC AGTTCTGCAT GCCCAATCTG
GCGTCCGAAC TCAAGCGTGC TATGGATCGC TTCGGGTTGA AACCAGGGCA GATTGAGGTG
GAAATCACCG AAGGCTCGCT GGTGCACAAC CTCACGCACA GCCACAAGCA ACTGAAGTTG
CTGCATGAAG TCGGTGTGCG CATTGCACTG GACGACTTCG GAACGGGTGA GTGTTCGCTG
TCGCACCTGC GCAATCTTCA GCTTGATACG TTGAAGCTGG ACAGGCGTTT TGTGGCCAAC
ATCGTGGAGT CCAGGCGAGA GGCGGCAATG GCCAGAAGCA TCATCGATTT GAGTCGCAAC
CTCGATATGC TGGTCATCGC CGAGGGCGTC GAAACCATCG AGCAATATCA GTGGCTGGCC
GATAACGGCT GCCAGGTCAT GCAGGGCTTT CTGATCGCTC ATCCGATGGT GGCGGAAGAA
GCCTTACACT TTCCAGCGCA CTTTGAGCCG GCAGGCTTGA AGAAGGGTGG TTTGCTGTAG
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| Protein sequence | MPTQRSSMER VPTQPHDGSS VLLVVDDYPE NLVTMCAVLQ RTDWHIVTAS SGIEALTVLL
EQEVDLVLLD VQMPGMDGFE VARLMRGSQR TRLTPIIFLT ANEQTQDAVQ KGYANGATDY
LFKPFDPNVL KPKVQTLLEQ QRNRRALQQL SMELESARAF NASVLANVAE GILVVDEAGN
ISFANPAICQ LLNASVDQLR GTQVLDYVIE PQVSSWLESG FYQHYRKADT YRVHDAILRT
AQGSQLPVAL SCAALPAEQK AMVLTVLDMS VVRDLYQQLE KQAVTDALTG LLNRRGLYQA
VESMLLRNER ADKYLVVLFM DLDGFKQIND ALGHDAGDQV LLWVAEQFKD SMRPYDVLAR
IGGDEFTVVI DGLDYPEQAA KIAEKLIERV SGRRQVNGVD ITLGASVGIA TFPDCGSNLD
GLLRAADIAM YEAKRAGRQQ YRFYDQNMNG RARSRLMLEE SVRTAIDGKD FSVVYQPQIH
VGDGRLRGFE ALLRWQHPAV GEVPPALFIP LLEETRLINR LGGWIFDQGA EQRQAWNGVF
APDVVLSVCV SPTQFCMPNL ASELKRAMDR FGLKPGQIEV EITEGSLVHN LTHSHKQLKL
LHEVGVRIAL DDFGTGECSL SHLRNLQLDT LKLDRRFVAN IVESRREAAM ARSIIDLSRN
LDMLVIAEGV ETIEQYQWLA DNGCQVMQGF LIAHPMVAEE ALHFPAHFEP AGLKKGGLL
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