| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4977 |
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| Symbol | |
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| ID | 1186662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5648897 |
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| End bp | 5650336 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396298 |
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| Product | outer membrane efflux protein TolC, putative |
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| Protein accession | NP_794710 |
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| Protein GI | 28872091 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCGCA AACTTTCGTT GGTCGTGGCT GTTTCGTTGG CGTCCAGCGG ACTGACCTGG
GCTGCCGACT TGCCGCTGCC AACCAAAACC GGTCTGTTGA ATGTGTATCA GCAGGCGGTA
GACAACAACG CCGACCTCGC GGCCTCGCGT GCCGATTACG ATGCCCGCAA GGAAGCCGTG
CCACAGGCCC GAGCCGGCCT GCTGCCGAAT ATTTCCGGCA GTGTCCAGAA CACCAACACC
CGCACCAGCA TCGACCGCCC CAGCGCCGTG GCGACCCGCA GCGGCACGGT TTATCAGGCC
ACCCTGAGCC AGCCGATCTT TCGCGCCGAC CGCTGGTTCC AGTTGCAGGC TGCCGAAGCG
GTCAACGAAC AGGCCGCGCT GGAACTGTCG GCCACCGAGC AGAACCTGAT CCTGCAATCG
GCGCAGAGCT ATTTCAGTGT GTTGCGCGCG CAGGACAATC TGGCCTCGAC CAAGGCTGAG
GAAGCGGCGT TCAAACGCCA GCTCGATCAG GCCAACGAAC GCTTCGATGT CGGTCTGTCA
GACAAGACCG ATGTGCTGCA GGCCCAGGCC AGCTACGACA CCTCGCGCGC CAGCCGGCTG
ATCGCCAGGC GTCAGGTGGA CGATGCCTTT CAGGCGCTGG TGACCCTGAC CAATCGCGAA
TACAACTCCA TCGAAGGCAT CGTGCACACC TTGCCGGTGC TGGCACCAAC GCCCAACGAC
GCCAAGGCCT GGGTGGATAC GGCAGCGCAA CAAAACCTCA ACCTGCTGGC CAGCAACTAC
GCCGTCAGCG CTGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGGCACGC GCCCACCCTT
GATGCCGTGG CGACTTACCA GCGTGGCGAC AACGATGCAT TGGGTTTCAA CAACCCCAAC
TACACCGGGC AAAATTACGG CGGCGACGTC GAGCAACGCA GCATTGGCGT GCAGTTGAAT
ATCCCGATCT ACAGCGGCGG CCTGACCAGT TCACAGGTGC GTGAGGCTTA TTCGCGCCTG
AGCCAGAGCG AGCAGCGCCG CGAAAGCCTG CGACGTCAGG TGGTGGAAAA CACCCGTAAC
CTGCACCGTG CGGTGAACAC TGATGTCGAG CAGGTTCAGG CGCGCAAACA GTCGATCATC
TCCAACCAGA GTGCGCTGGA AGCCACGGAA ATCGGCTATC AGGTCGGCAC CCGCAACATC
GTCGATGTGC TGGACGCCCA GCGTCAGTTG TATGCCTCGG TGCGTGACTA CAACAACACG
CGCTATGACT ACATCCTCGA CAACCTGCGC CTCAAGCAGG CAGCGGGCAC CCTGAACCCG
GGCGACTTGC AGGACCTGTC ACGCTACCTC AAACCGGACT ACAACCCGGA CAAGGACTTC
CTGCCGCCGG ATTTGGCGAC TGCAGCGCAG AAGAATTTCG AGCGGCCGGC GCAGCGCTGA
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| Protein sequence | MLRKLSLVVA VSLASSGLTW AADLPLPTKT GLLNVYQQAV DNNADLAASR ADYDARKEAV
PQARAGLLPN ISGSVQNTNT RTSIDRPSAV ATRSGTVYQA TLSQPIFRAD RWFQLQAAEA
VNEQAALELS ATEQNLILQS AQSYFSVLRA QDNLASTKAE EAAFKRQLDQ ANERFDVGLS
DKTDVLQAQA SYDTSRASRL IARRQVDDAF QALVTLTNRE YNSIEGIVHT LPVLAPTPND
AKAWVDTAAQ QNLNLLASNY AVSAAEETLR QRKAGHAPTL DAVATYQRGD NDALGFNNPN
YTGQNYGGDV EQRSIGVQLN IPIYSGGLTS SQVREAYSRL SQSEQRRESL RRQVVENTRN
LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YASVRDYNNT
RYDYILDNLR LKQAAGTLNP GDLQDLSRYL KPDYNPDKDF LPPDLATAAQ KNFERPAQR
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