| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4939 |
|---|
| Symbol | hflC |
|---|
| ID | 1186624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5598312 |
|---|
| End bp | 5599181 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637396260 |
|---|
| Product | hflC protein |
|---|
| Protein accession | NP_794672 |
|---|
| Protein GI | 28872053 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | [TIGR01932] HflC protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.744013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA AATCGCTGAT CACCCTTATT GTTGGTGTGG TACTGGCAGT CGTTGCCTGG
AACAGCTTCT ACATAGTGTC CCAGACCGAG CGTGCGGTTT TGCTGCAGTT CGGCAAGGTG
GTTCAGACTG ACGTCAAGCC GGGTCTGCAC GTGAAGGTCC CTTACGTGAA CCAGGTGCGC
AAGTTCGACG GACGTCTGCT GACGCTCGAT GCGCCTACCC AGCGTTTTCT GACGCTGGAA
AAGAAAGCCG TCATGGTTGA TGCCTATGCC AAATGGCGCG TGAAGGATGC GGAGCGTTTC
TATACTGCGA CTTCCGGCCT CAAGCAGATT GCCGACGAGC GCCTGTCGCG TCGTCTGGAA
TCCGGCCTGC GAGACCAGTT CGGCAAGCGC ACCCTGCATG AAGTCGTGTC GGGTGAGCGG
GATGCACTGA TGGCTGACAT CACGGGTTCG CTGAACCGCA TGGCTGAGAA AGAGCTGGGT
ATCGAAGTAC TCGATGTCCG GGTCAAGGCC ATCGACCTGC CCAAGGAAGT GAATCGCAGC
GTTTTCGAGC GGATGAGTAC CGAGCGTGAA CGTGAAGCGC GCGAGCACCG TGCCAAGGGT
AACGAGCTGG GTGAAGGCAT CCGTGCCGAC GCCGATCGTC AACGCCGTGT ATTGCTGGCA
GAAGCCTATC GCGAGTCTGA AGAGGCGCGT GGTGATGGTG ATGCCCAGGC TGCGGCGATC
TATTCCAAGG CCTACGGTCA GGATCAGGAG TTCTACGCGT TTTATCGTAG CCTGCGTGCC
TACCGCGAAA GCTTTGCGAA CAAGAGTGAC GTGATGGTGC TTGATCCAGA CAGCGAATTC
TTTCGCTACA TGGAAAAAGC CAAGCCGTAA
|
|---|
| Protein sequence | MSNKSLITLI VGVVLAVVAW NSFYIVSQTE RAVLLQFGKV VQTDVKPGLH VKVPYVNQVR
KFDGRLLTLD APTQRFLTLE KKAVMVDAYA KWRVKDAERF YTATSGLKQI ADERLSRRLE
SGLRDQFGKR TLHEVVSGER DALMADITGS LNRMAEKELG IEVLDVRVKA IDLPKEVNRS
VFERMSTERE REAREHRAKG NELGEGIRAD ADRQRRVLLA EAYRESEEAR GDGDAQAAAI
YSKAYGQDQE FYAFYRSLRA YRESFANKSD VMVLDPDSEF FRYMEKAKP
|
|---|
| |