Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4864 |
Symbol | |
ID | 1186547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5509603 |
End bp | 5510616 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637396184 |
Product | TIM-barrel protein, putative, NifR3 family |
Protein accession | NP_794598 |
Protein GI | 28871979 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGCAG TACGCATCGG CCCGTATACA GTGCACAACG GCTTGATCCT CGCCCCGATG GCGGGCGTCA CCGACCAGCC TTTCCGTCAG CTGTGCCGAC AACTCGGTGC TGGCCTGGTG GTATCGGAAA TGGTCACCAG TGACATGAGC CTGTGGAACA GCCGCAAATC GCGTCTGCGC ATGATCCACG CAGGTGATCC CGAGCCCCGC TCGGTACAGA TCGCTGGTGG TGACGCGCAG ATGATGGCAG ACGCAGCACG TGCCAATGTT GAACTGGGTG CCCAGATCAT CGACATCAAC ATGGGCTGCC CGGCCAAGAA GGTCTGTAAC AAGGCGGCAG GTTCGGCGCT GTTGAAAGAC GAGCAACTGG TCAACGACAT CCTGCAGGCC GTTGTGGCTG CGGTCGATGT GCCGGTCACG CTGAAGATCC GCACCGGCTG GGACCGCGAC AACCGTAACG GCCTGACCGT GGCGAAAATC GCCGAGCAGG CGGGCATTCA GGCGCTGGCG GTGCACGGGC GAACCCGTGC CGACCTTTAC ACCGGCGAGG CCGAGTACGA CACCATTGCC ATGATCAAAC AGGCAGTGTC GATTCCGGTC TTTGCCAATG GCGACATCGA TTCACCCGAA AAAGCCCGGC ACGTGCTACA GGCCACCGGC GCAGACGGAT TACTGATTGG CAGGGCCGCC CAGGGGCGTC CCTGGATTTT TCGCGAGATA GAACACTACC TGCTTACCGG AAAAACACTC CCGGCCCTGC AGTCGAGTGA AGTGGAACGC ATTCTGCTTG AGCATCTGGC AGCGCTCCAC GTTTTCTATG GCGACGTGAT GGGCGTGCGT ATTGCACGCA AACACGTTGG TTGGTATCTC GCAACCCTGC CGGGCGCCAG GGAGTTTCGC GCCCTCTTCA ATCGTTTGGA AGATACGGAA GCACAGTGCG CCAACGTTCG GGAGTTCTTC AGCCAAGGCT GCAAGGGCCC GGATAACCAG AATGATAAAG AGGTGGCCGC ATGA
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Protein sequence | MSAVRIGPYT VHNGLILAPM AGVTDQPFRQ LCRQLGAGLV VSEMVTSDMS LWNSRKSRLR MIHAGDPEPR SVQIAGGDAQ MMADAARANV ELGAQIIDIN MGCPAKKVCN KAAGSALLKD EQLVNDILQA VVAAVDVPVT LKIRTGWDRD NRNGLTVAKI AEQAGIQALA VHGRTRADLY TGEAEYDTIA MIKQAVSIPV FANGDIDSPE KARHVLQATG ADGLLIGRAA QGRPWIFREI EHYLLTGKTL PALQSSEVER ILLEHLAALH VFYGDVMGVR IARKHVGWYL ATLPGAREFR ALFNRLEDTE AQCANVREFF SQGCKGPDNQ NDKEVAA
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