Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4742 |
Symbol | |
ID | 1186425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5368939 |
End bp | 5370987 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637396064 |
Product | site-specific recombinase, phage integrase family |
Protein accession | NP_794478 |
Protein GI | 28871859 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.199879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGACT TCTATGAAGG TGTCGTTAAT GAAACTCAGC CATTCGACGC AGCGGGTTCA ATTCCTGTTG ATCCAACTTG GAGGCCTTCG GCTGATTTCG TCATTTGTCG CAATGTCGAT GGTGAAGTTA CAGCATGTTA CGGCGGAGCG AAGTGGGATC TTAATCCCAT AAGGCTCAAG GCAAATCGCA TCGCCATGAT CGGGTTTAAT AGCATTTTCA AAAAGTATGA CTCTGGCCAG AGTTGTCTTG TAAAGGAAGT GAGGTATCTC TTGTTTTGCT TGTTTTTCTA TGTTCAGACC GGACATCTAG GAAGGATGAG CGCGGGGATG CTAGGCCAAT ATTTTTTGAC TTTACGAACA GCTGCGCGCT ATTGCTGGGA TCAAGAAGCC AATCCGCTGG TAGGTGTCAT AAGTCTCCAG CAGTTATTTT CTAATCCGGC CTATCTTAAT GCCTATAGTA AATGGATGGC TAGGGAGAAT ATAGGGAGTA CTCAGCGAAG GCTCACTAAG TCCCTTATTT CGCATATGGT CGCCATTGGC GAAGAGCGTC TAGGCTATAA GCTGCATGGC GTCTTTAATA TTGACTTTTG CGCTGTCGCA GAAGTTCAGC ATCAGCATCC AGTAATTCCG ACAAAGATAT ATCTCGGGGT AATTAATTCT GTTGGCGATT GGATGGATTT CATTTATCCA AAGAGGAAAG CTATTGAGCA TTTCCTAGAT TGCTTCATAA GTCCATATTA CGGATATACA GAAGCCCATC AGAAAACTAT GTTCGGAGGG CCGGATGTAG TCGAGCCGGA ATTTGATCAG GCTTTGCGAC TACATAAGCT TGATAAGATT TTCACCGGAG ATTTGAATTG CGCTGGTCGA GGTGTATTGT CTTCGGCTAT TCTAAAAGTG CAATGGATTC TTAAGACGGT CATTCATATC TACACAGGTA TGCGTGACCA GGAAGTAATG CTTCTGCCCT ACAACTGTAT CGACGTCGAG GAGGTTGTTG CTGCGACTCT TGATGAGGAT GGAGTGAGTC GAGATAAACC GAAAATCGTG AAGGTGCTTT CGAGTACGAC TAAATTCACT GGATATCGTA AGTCCTCGTC TTGGTTGGCT ACGGATGAGG TTGTACGTGC AGTTGAAATT GCTCGCTCCA TTTGTCGAGC GATCTCCAAT TTATTCGGAG TTCGCCCAGA GGATATGCCT CTTTTCCTCA ATCCAGCGAT TATTAATAGG CGTGAAACGA AAGTAGGCGT GCCGACATGG AACGACGTGT CGAAGCCGAA GTTTCTTTTG AATCAGCTAG TAATCACAGA GTCTGACTTT CAGGAGTTGC AGGCTACCGA CCCTCTCCGA GATTTCTTAA GCGCGGCAGG TTTCAGTATT GGTTCGCCAT GGTCATTTAC AAGTCATCAG TTTCGCCGGT CGCTGGCTTT TTATGGAAGT AATAGTGGAT TTATCTCTCT CCCCACTCTT CGAAAGCAGT TCAAGCATCT TTCTGTTCAA ATGACGCGCT ATTATGCGAA TAACTTCTCA AGGCTCAAAA CTATTTTTGG GTACTACGAT GAGGAGGTAG GTGACTTTGT ACTGCCTAAG CATCATGTGC TTTTCGAATA TCAAATTGGC ATGCCTTTAA ATATCGCATA TGATCTTCTT TCTCACGCGT TTGGAGACGG TGCGCAACTT TTTGGGGGAA CTGGAAGCTA CATTTCCACT CAGCGCAAAA AGATGCATGA GAGTGGTATT CATATTGCTA CTCTGAGGAA GAAGACGGAA AACCAAGCAT TAGATGGCAG GATCTCTTTT AAAGTTACCT TGCTGGGTGC CTGTACATAC CCTGGAAAGT GCGACTCCTA TCTTTTGGGG GATATTACAT CATGCTTGTC TTGTGCAGAT GGCATCATTG AACGAGATAA GCTGGAAGAG GCCATCGGTG ACAGCGAGGC GGATCTGTTG CTATATGAGC CTGGTTCAGG CGAGTACCAG GTTGTTGAGG CCGAGTTGAC AAGCTTAAAA AAATTCCACC AGAAATTCAT TGCGGTTGTT GAGGTATAG
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Protein sequence | MVDFYEGVVN ETQPFDAAGS IPVDPTWRPS ADFVICRNVD GEVTACYGGA KWDLNPIRLK ANRIAMIGFN SIFKKYDSGQ SCLVKEVRYL LFCLFFYVQT GHLGRMSAGM LGQYFLTLRT AARYCWDQEA NPLVGVISLQ QLFSNPAYLN AYSKWMAREN IGSTQRRLTK SLISHMVAIG EERLGYKLHG VFNIDFCAVA EVQHQHPVIP TKIYLGVINS VGDWMDFIYP KRKAIEHFLD CFISPYYGYT EAHQKTMFGG PDVVEPEFDQ ALRLHKLDKI FTGDLNCAGR GVLSSAILKV QWILKTVIHI YTGMRDQEVM LLPYNCIDVE EVVAATLDED GVSRDKPKIV KVLSSTTKFT GYRKSSSWLA TDEVVRAVEI ARSICRAISN LFGVRPEDMP LFLNPAIINR RETKVGVPTW NDVSKPKFLL NQLVITESDF QELQATDPLR DFLSAAGFSI GSPWSFTSHQ FRRSLAFYGS NSGFISLPTL RKQFKHLSVQ MTRYYANNFS RLKTIFGYYD EEVGDFVLPK HHVLFEYQIG MPLNIAYDLL SHAFGDGAQL FGGTGSYIST QRKKMHESGI HIATLRKKTE NQALDGRISF KVTLLGACTY PGKCDSYLLG DITSCLSCAD GIIERDKLEE AIGDSEADLL LYEPGSGEYQ VVEAELTSLK KFHQKFIAVV EV
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