Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4578 |
Symbol | |
ID | 1186261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5174393 |
End bp | 5175106 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395917 |
Product | glycine betaine/carnitine/choline ABC transporter, permease protein |
Protein accession | NP_794329 |
Protein GI | 28871710 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCTAATC GCTATGGCAA GGGGCTATTG GGAGGCGCGG TTGTGATCGC ACTCCTGGCC CTGCTGATCC ACTGGATCGG CATCAGTACT ATCAAGCAAT ACCAGGATGA CCTGCTGTTC TACCTTCAGG CTCACCTGAT TCTGGTTCTG GTTTCAATGT TGGCGGCCCT GGTGATCGGT ATTCCCGCAG GCATCGCCCT CAGCCGACCG AGCATGGTGG GCCGCGCCGA ACGCTTCATG CAGATATTCA ACATTGGCAA CACCGTTCCG CCACTCGCCG TTCTGGCCAT TGCCCTCGGG ATTCTCGGGA TCGGCAGCGG GCCGGCGATC TTCGCGCTGT TTCTCGCCTC GCTGTTGCCC ATCGTGCGTA ACACCTATGA AGGCCTGAAA AACGTTCAGG GTTCACTCAA GGAAGCCGCC GTCGGTATCG GCATGACGCC GCGTCAAGTG CTGTGGCGTG TCGAATTGCC CAACGCTGTG CCGATCATTA TTGGTGGCGT GCGTGTCGCG CTGGCGATCA ACGTCGGGAC CGCGCCGCTG GCGTTTCTCA TCGGTGCCAA CAGCCTCGGC AGCCTGATTT TCCCGGGCAT TGCCTTGAAC AACCAGCCGC AACTGGTGCT GGGCGCGGCG TGTACCGCGC TGCTGGCGCT GCTGCTCGAT GGCCTGGTGA CACTGGCCAG TCGTCTCTGG CTGGAACGCG GACTGGCTCG CTGA
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Protein sequence | MANRYGKGLL GGAVVIALLA LLIHWIGIST IKQYQDDLLF YLQAHLILVL VSMLAALVIG IPAGIALSRP SMVGRAERFM QIFNIGNTVP PLAVLAIALG ILGIGSGPAI FALFLASLLP IVRNTYEGLK NVQGSLKEAA VGIGMTPRQV LWRVELPNAV PIIIGGVRVA LAINVGTAPL AFLIGANSLG SLIFPGIALN NQPQLVLGAA CTALLALLLD GLVTLASRLW LERGLAR
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