Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4511 |
Symbol | |
ID | 1186194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5081895 |
End bp | 5082692 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637395852 |
Product | ISPsy11, transposase OrfB |
Protein accession | NP_794264 |
Protein GI | 28871645 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.5786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTATTT CGCGCCAAGC GTATTACAAG CGTAATCGCG CTTTTGACGC GAGAGTCTGC CAAGACCAAG AGGTGGTGGA CTTCGTCCTG GAAAAGCGGC GTCGCCAGCC CAAGTTGGGA ACGCGCAAGC TGCACTACTT GATGAGCGTC GAAGCTCCTG CGTCGTTGTG CGTGGGTAGA GATCGTATGT TTACTATCCT TCGTGGTGCG CGCGAGCTGG TTCCGCGTAA ACGGGCTTAT CACAAGACCA CTCATAGCCA TCATCGCTTC CGTCGCCACC CCAACCTGCT CAAAGCAGGT CCAGAACAAG TCGTGGCCAA TGGACCCGAA CAGGTCTGGG TTGCAGACAT AACCTATCTG CCTACGCAGG AAAGCGTGGC CTACGTGAGC CTTGTGACAG ATGCGTACTC ACGTAAGATC GTTGGCCATC ACGTGCATGA GAGCCTGCAT GCCCAATCGG TGATGAAGGC ACTGGAAAAA GCGGTAGGAG AGCGAAAAAC CGATCAGATG CTGATTCATC ATTCAGATCG CGGCGCCCAG TACTGCTCCG ATCTCTATCA GCAGCTGCAT ACCAGGCATG GAATCCGGTG CTCGATGACT GATGGCTATG ACTGTTATCA GAACGCTATG GCCGAGCGAG TAAACGGGAT TTTGAAGACC GAGTTTCTAC TCCATCGGCC TAAAGACTTG GCAGATGCAG TGAAAATGGT TGACGAATCG GTGCAGATCT ACAATGGGGA GCGGCCACAC TTATCCCTGA AATACAAAAC GCCAGATGCG GTGCATCGGG CGTTTTGA
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Protein sequence | MGISRQAYYK RNRAFDARVC QDQEVVDFVL EKRRRQPKLG TRKLHYLMSV EAPASLCVGR DRMFTILRGA RELVPRKRAY HKTTHSHHRF RRHPNLLKAG PEQVVANGPE QVWVADITYL PTQESVAYVS LVTDAYSRKI VGHHVHESLH AQSVMKALEK AVGERKTDQM LIHHSDRGAQ YCSDLYQQLH TRHGIRCSMT DGYDCYQNAM AERVNGILKT EFLLHRPKDL ADAVKMVDES VQIYNGERPH LSLKYKTPDA VHRAF
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