Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4494 |
Symbol | tpiA |
ID | 1186177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5061980 |
End bp | 5062735 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395835 |
Product | triosephosphate isomerase |
Protein accession | NP_794247 |
Protein GI | 28871628 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0149] Triosephosphate isomerase |
TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.321001 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCGCC CAATGGTAGC TGGTAACTGG AAAATGCACG GTACCCGCGC CAGCGTCGCT GAGCTGATCG AGGGTTTGGT CAAGCAGGCG TTGCCTGGCA GCGTCGATAT CGCCGTAATG CCTGCAAGCC TGTTTACCAG TCGAGTGATC GAGGGCCTTC AGGGTACGTC GATCATTGTC GGTGCGCAGG ATGCAGCCAT TCAGGCTGAG CAGGGCGCAC TGACCGGCGA AATCGCATCG AGCCAATTGG CTGATGCCGG TTGCAAGCTG GTACTCGTCG GGCACTCGGA GCGTCGTCAG CTGATTGGCG AGCAGGATGA GGTGCTCAAC AAGAAGTTCG CAGCGATACA GGCAAGCGGT CTTACCCCTG TGCTTTGCAT AGGCGAGACG CTTGAAGAGC GCAAGGCAGG GCAAACGCTT GAAGTTGTCG GGCGTCAGCT TGACAGCGTC ATTGCAGAGT TTGGTATTGG TGCGCTGGTC AATGCAGTAA TTGCCTACGA GCCAGTCTGG GCCATCGGCA CCGGATTGAC CGCTTCGCCT CAAGAGGCGC AGGAGGTGCA CGCAGCAATT CGTGCGCAAC TGGCAAAAGA GAATGCCGAA GTCGCACAAG GCGTGCGACT TCTCTATGGC GGCAGCGTGA AGGCGGCCAA TGCGGTCGAG CTTTTCAGCA TGCCGGATAT CGATGGGGGG CTCATTGGTG GAGCGTCCCT GAATGCAGAT GAGTTCGGTG CGATCTGTCG CGCCGCGGGA AACTGA
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Protein sequence | MRRPMVAGNW KMHGTRASVA ELIEGLVKQA LPGSVDIAVM PASLFTSRVI EGLQGTSIIV GAQDAAIQAE QGALTGEIAS SQLADAGCKL VLVGHSERRQ LIGEQDEVLN KKFAAIQASG LTPVLCIGET LEERKAGQTL EVVGRQLDSV IAEFGIGALV NAVIAYEPVW AIGTGLTASP QEAQEVHAAI RAQLAKENAE VAQGVRLLYG GSVKAANAVE LFSMPDIDGG LIGGASLNAD EFGAICRAAG N
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