Gene PSPTO_4478 details

Gene Information

• Locus tag: PSPTO_4478
• Symbol: pcaC-2
• ID: 1186159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5042401
• End bp: 5042784
• Gene Length: 384 bp
• Protein Length: 127 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637395818
• Product: 4-carboxymuconolactone decarboxylase
• Protein accession: NP_794232
• Protein GI: 28871613
• COG category: [S] Function unknown
• COG ID: [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
• TIGRFAM ID: [TIGR00778] alkylhydroperoxidase AhpD family core domain; [TIGR02425] 4-carboxymuconolactone decarboxylase

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGACA AGACAATCAG CAACGGCGAA CAGATTCGTC GTCAGGTGAT GGGCGATGTC 
TTCGTTGACC GCGCACTGGG CAATGCCACC GAGTTCAGCC AGCCACTGCA GGACTTCGTC 
AACGAGCACG CCTGGGGCAG CGTCTGGAGC CGTGATGGTC TGCCGCTGAA AACCCGCAGC 
CTGATCACCC TGGCCGCCCT CACCGCGCTT AAATGCCCGC AAGAACTGAA GGGCCATGTG 
CGTGGCGCGC TGAACAACGG CTGCACCGTC GAAGAGATTC GTGAAGCACT GCTGCACTGC 
GCGGTATACG CCGGTGTGCC AGCGGCTATC GATGCGTTTC GGGCTGCGCA GGAAGTGATC 
GACAGCTACG TCAAGCCGGA TTGA 

 

Protein sequence

MTDKTISNGE QIRRQVMGDV FVDRALGNAT EFSQPLQDFV NEHAWGSVWS RDGLPLKTRS 
LITLAALTAL KCPQELKGHV RGALNNGCTV EEIREALLHC AVYAGVPAAI DAFRAAQEVI 
DSYVKPD