Gene PSPTO_4451 details

Gene Information

• Locus tag: PSPTO_4451
• ID: 1186132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5015772
• End bp: 5016320
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637395791
• Product: ostA family protein
• Protein accession: NP_794205
• Protein GI: 28871586
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.953915
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGCTCG TTAAAACTCT TCCTTTATTG CTCGGCCTGA GCGCGGCACT GGGAAGCGCG 
AGCGCCTGGT CCCTGCCAAA TGACCGTGAT CAGCCGATCC ACATCCAGTC TGACGATGCT 
CAGCTCGATG ACAAGAAAGG CGTGGCGACC TACAAAGGTA ACGTCATCAT CACCCAGGGC 
TCGATGAAAA TCACCGGCAA CACCGTGACG ATCACTCGTA ATGCCCAGGG CGAAGTCGAT 
GTGTTTACCT CGGTCGGCAA CCTGGCCTAC TACGAGCAGA AGCCTGCCGT GGACAAACCG 
ATCGTGCAGG CATACGCCAT CACCATTCAG TATTACGCCG GGCAGGACCG TATTGTCCTG 
ATCGACAAGG CCAAGGTCGT CAATGACGGC AACACGTCAG AAGGCGAGAA AATCGTCTAT 
GACACCGTCA GGCAGGTCGT CAGCGCCGGC CGGGCCAATG GCGGCGCCAA GGTGACCACA 
CCACGTCCGC GTATCGACAT GGTCATCCAG CCGAAAAAGA AAACCGATCA ACCGCAGAAG 
GCCCCGTAA 

 

Protein sequence

MRLVKTLPLL LGLSAALGSA SAWSLPNDRD QPIHIQSDDA QLDDKKGVAT YKGNVIITQG 
SMKITGNTVT ITRNAQGEVD VFTSVGNLAY YEQKPAVDKP IVQAYAITIQ YYAGQDRIVL 
IDKAKVVNDG NTSEGEKIVY DTVRQVVSAG RANGGAKVTT PRPRIDMVIQ PKKKTDQPQK 
AP