| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4435 |
|---|
| Symbol | |
|---|
| ID | 1186116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5002982 |
|---|
| End bp | 5004142 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395775 |
|---|
| Product | trypsin domain protein |
|---|
| Protein accession | NP_794189 |
|---|
| Protein GI | 28871570 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00143811 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGG CACTGCGTTT TTTCGGCTGG CCATTGCTGG CTGGCGTGCT TATCGCCCTG
CTGATCATCC AGCGTTATCC GCAGTGGGTT GGCCTGCCGA GCATGGATGT CAATCTGCAA
CAGGCGCCAC AGACGACCAA TGTCATGCAG GGCCCCTCTT CCTATGCCGA TGCGGTCATT
GCCGCAGCGC CAGCGGTGGT CAACCTCTAT ACCACCAAGA TGGTGAACAA GGGCACCAAC
CCGCTTTTTG AAGACCCGCA GTTCCGGCGC TTCTTTGGCG ACAACACGCC TAAACAGAAG
CGCATGGAGT CCAGCCTTGG CTCTGGCGTG ATGATGAGCC CGGAAGGCTA CATCCTGACC
AATAACCACG TCACCACTGG CGCGGACCAG ATCGTGGTGG CGCTCAAGGA CGGCCGCGAA
ACCATCGCCA GAGTCATTGG CAACGACCCG GAAACCGACC TTGCGGTCTT GAAAATCGAT
CTGAAAAACC TGCCAGCCAT TACCATCGCG CGCTCCGACG GCATTCGTAT CGGCGACGTC
GCACTGGCCA TCGGCAACCC GTTCGGCGTC GGCCAGACCG TGACGATGGG CATCATCAGC
GCCACCGGGC GTAACCAGTT GGGCCTGAAC ACGTATGAAG ACTTCATTCA GACCGACGCA
GCCATCAACC CCGGCAACTC GGGCGGTGCG CTGGTGGATG CCGCTGGCAA TCTGATCGGC
ATCAATACCG CGATCTTTTC CAAGTCCGGC GGATCTCAAG GCATCGGCTT CGCTATCCCG
ACCAAGCTGG CGATGGATGT CATGAAGTCG ATCATCGAAC ACGGTCAGGT CATTCGCGGC
TGGCTGGGCA TCGAGGTTCA ACCGTTGACC CCGGAGCTGG CCGAGTCCTT CGGGCTCAAG
GATCGTCCAG GCATCGTTGT CGCTGGTATT TTTCGCGATG GGCCAGCGCA GAAAGCCGGG
CTGCGACTGG GTGACGTAAT TCTTGCCATC AATGGCGAAC CTGCGGGTGA CGGCCGTCGC
TCGATGAACC AGGTGGCGCG CACCAAGCCC AAGGACAAGA TTGCAATCGA CGTGATGCGC
AACGGCAAGG AAATGCGCCT CAGCGCAGAA GTAGGCCTGC GCCCACCGCC TGCACCGACA
CCTGCCGCAG CGCCCGAGTA A
|
|---|
| Protein sequence | MFKALRFFGW PLLAGVLIAL LIIQRYPQWV GLPSMDVNLQ QAPQTTNVMQ GPSSYADAVI
AAAPAVVNLY TTKMVNKGTN PLFEDPQFRR FFGDNTPKQK RMESSLGSGV MMSPEGYILT
NNHVTTGADQ IVVALKDGRE TIARVIGNDP ETDLAVLKID LKNLPAITIA RSDGIRIGDV
ALAIGNPFGV GQTVTMGIIS ATGRNQLGLN TYEDFIQTDA AINPGNSGGA LVDAAGNLIG
INTAIFSKSG GSQGIGFAIP TKLAMDVMKS IIEHGQVIRG WLGIEVQPLT PELAESFGLK
DRPGIVVAGI FRDGPAQKAG LRLGDVILAI NGEPAGDGRR SMNQVARTKP KDKIAIDVMR
NGKEMRLSAE VGLRPPPAPT PAAAPE
|
|---|
| |