| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4400 |
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| Symbol | secA |
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| ID | 1186081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4964661 |
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| End bp | 4967402 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395740 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | NP_794154 |
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| Protein GI | 28871535 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.188368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCGC CTTTGTTGAA AAAACTTTTT GGAAGCAAGA ACGAGCGTGA AGTCAAACGC
ATGCTCAAGA CGGTACAGAT CGTCAATGCC TTCGAAGAGC AAATGGTGGC CCTTTCGGAC
GAGCAATTGC GCGCCAAGAC CGAAGAGTTC AAGGCCCGCA TAGCCAAAGG CGAGACCCTC
GATCAATTGC TGCCTGAAGC CTTCGCGGTG GCCCGTGAAG CGGGCAAGCG TGTCATGGGC
ATGCGCCACT TCGACGTTCA GTTGATCGGC GGCATGACCC TGCACGAAGG TCAGATCGCA
GAAATGCGTA CCGGTGAAGG TAAAACCCTC GTCGGCACCT TGGCTGTGTA CCTCAATGCG
TTGTCCGGCA AGGGCGTTCA CGTGGTTACC GTGAACGACT ACCTCGCTCG CCGCGACGCC
AACTGGATGC GCCCGCTGTA CGAATTCCTC GGTCTGACCG TCGGCATCGT CACGCCATTC
CAGCCGCCGG AAGAGAAGCG CGCCGCCTAC GCTGCCGACA TCACCTACGG CACCAATAAC
GAATACGGCT TCGATTACCT GCGCGACAAC ATGGCGTTCA GCATGGACGA CAAGTTCCAG
CGCGAACTCA ACTTCGCCGT GATCGACGAA GTCGACTCGA TTCTGATCGA CGAAGCGCGC
ACGCCGTTGA TCATCTCGGG TCAGGCCGAA GACAGCTCCA AGCTGTATAC CGAAATCAAC
CGCCTGATCC CCAAGCTCGA GCAGCACATC GAGGAAGTGG AAGGCGAAGT TACCAAGCCG
GGCCACTTCA CCGTTGACGA AAAAACCCGT CAGGTCGAGC TGAACGAAGC CGGTCACCAG
TTCATCGAAG AGATGCTCAC CGAAGTCGGC CTGCTGGCCG AAGGCGAGAG CCTGTATTCG
GCGCATAACC TGGGCCTGTT GACGCACGTC TATGCCGGTC TGCGTGCGCA CAAACTGTTC
AATCGCAACG TCGAGTACAT CGTTCAGGAC GGTCAGGTGC TGCTGGTTGA CGAGCACACC
GGTCGTACCA TGCCGGGTCG TCGCTTGTCC GAGGGTCTGC ATCAGGCTAT CGAAGCCAAG
GAAAACCTGA ACATTCAGGC TGAAAGCCAG ACCCTGGCCT CGACCACCTT CCAGAACTAC
TTCCGTCTGT ACAACAAACT GTCCGGCATG ACCGGTACGG CCGACACCGA AGCGTTCGAA
TTCCACCAGA TCTACACCCT GGCGGTGATG GTCATTCCGC CGAACAAGCC TTTGGCGCGT
AAAGACTTCA ACGACCTCGT CTATCTGACG GCGGAAGAGA AGTACGCGGC CATCGTGACT
GACATCAAGG CCTGCCTGGC CGAGAATCGT CCGGTGCTGG TCGGTACGGC GACCATCGAA
ACGTCCGAGC ACATGTCCCG CCTGCTCAAC AATGAAGGCA TCGAACACAA GGTTCTGAAC
GCCAAGTTCC ACGAAAAAGA AGCCGAAATC ATTGCTCAGG CCGGTCGTCC AGGTGCGCTG
ACCATCGCCA CCAACATGGC TGGTCGCGGT ACTGACATCC TGCTGGGCGG CAACTGGGAA
GTCGAAGTCG CCAACCTGGA AGACCCGACC CCCGAGCAGA TCGCACAGAT CAAGGCTGAC
TGGCAGAAGC GCCACCAGCA GGTGATCGAA GCGGGCGGCC TGCATGTGAT TGCCTCCGAG
CGTCACGAAT CGCGTCGTAT CGATAACCAG CTGCGAGGTC GTGCGGGTCG TCAGGGCGAT
ACCGGTTCCA GCCGTTTCTA CCTGTCGCTT GAAGACAGCC TGATGCGCAT CTTTGCCTCT
GACCGGGTGA AGAACTTCAT GAAGGCGCTG GGCATGCAGT CCGGTGAGGC CATCGAGCAC
CGCATGGTGA CCAACGCCAT CGAAAAAGCG CAGCGCAAGG TGGAAGGTCG TAACTTCGAC
ATCCGCAAGC AACTGCTTGA GTTCGATGAC GTGGCCAACG AGCAGCGCAA AGTGATTTAT
CACATGCGTA ACAGCCTGCT GGCTGCTGAG AACATCGGCG ACACCATTGC TGACTTCCGC
GAAGAAGTGC TCAACAGCCT GGTCAGCCAG CACATCCCGC CGCAATCCCT GCCAGAGCAA
TGGAACGTTG CCGGTCTGGA AGCTGCACTG AACACCGACT TTGCCGTGAA AATGCCGATC
CAGCAGTGGC TGGACGAAGA CGACAACCTG CACGAGGACA GCCTGCGCGA GAAAATCATG
GCGCAGTTGC TGGTCGCGTA TAACGAGAAG GAAGATCAGG CCAGCGCCGA AGCGCTGCGT
TCTTTCGAGA AGCAAATCCT GTTGCGTGTC GTCGACGACC TGTGGAAAGA CCATCTGTCG
ACGATGGACC ACCTGCGTCA CGGCATTCAC CTGCGCGGTT ACGCTCAGAA GAATCCGAAA
CAGGAATACA AGCGCGAGTC CTTTACGCTG TTCCAGGAGT TGCTGGATTC GATCAAGCGC
GACACCATTC GCGTGCTTTC GCACGTGCAA GTGCGCCGCG AAGATCCAGA GGAAGAAGAG
GCGCGTCTGC GTCGCGAGGC CGAAGAACTG GCCAGCCGCA TGCAGTTCGA ACACGCGCCA
GCGCCGGGTC TCGATCAGCC GCTGGCTGAT GAAGAGGGCG GCGAAGTGCC GGTAGCCGTG
GTCTCGGAGC CAATTCGCAA CGACCAGAAA CTGGGTCGTA ACGAGCTGTG CTGGTGTGGC
TCTGGCAAGA AATTCAAGCA CTGTCACGGC CAGATCAATT AA
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| Protein sequence | MFAPLLKKLF GSKNEREVKR MLKTVQIVNA FEEQMVALSD EQLRAKTEEF KARIAKGETL
DQLLPEAFAV AREAGKRVMG MRHFDVQLIG GMTLHEGQIA EMRTGEGKTL VGTLAVYLNA
LSGKGVHVVT VNDYLARRDA NWMRPLYEFL GLTVGIVTPF QPPEEKRAAY AADITYGTNN
EYGFDYLRDN MAFSMDDKFQ RELNFAVIDE VDSILIDEAR TPLIISGQAE DSSKLYTEIN
RLIPKLEQHI EEVEGEVTKP GHFTVDEKTR QVELNEAGHQ FIEEMLTEVG LLAEGESLYS
AHNLGLLTHV YAGLRAHKLF NRNVEYIVQD GQVLLVDEHT GRTMPGRRLS EGLHQAIEAK
ENLNIQAESQ TLASTTFQNY FRLYNKLSGM TGTADTEAFE FHQIYTLAVM VIPPNKPLAR
KDFNDLVYLT AEEKYAAIVT DIKACLAENR PVLVGTATIE TSEHMSRLLN NEGIEHKVLN
AKFHEKEAEI IAQAGRPGAL TIATNMAGRG TDILLGGNWE VEVANLEDPT PEQIAQIKAD
WQKRHQQVIE AGGLHVIASE RHESRRIDNQ LRGRAGRQGD TGSSRFYLSL EDSLMRIFAS
DRVKNFMKAL GMQSGEAIEH RMVTNAIEKA QRKVEGRNFD IRKQLLEFDD VANEQRKVIY
HMRNSLLAAE NIGDTIADFR EEVLNSLVSQ HIPPQSLPEQ WNVAGLEAAL NTDFAVKMPI
QQWLDEDDNL HEDSLREKIM AQLLVAYNEK EDQASAEALR SFEKQILLRV VDDLWKDHLS
TMDHLRHGIH LRGYAQKNPK QEYKRESFTL FQELLDSIKR DTIRVLSHVQ VRREDPEEEE
ARLRREAEEL ASRMQFEHAP APGLDQPLAD EEGGEVPVAV VSEPIRNDQK LGRNELCWCG
SGKKFKHCHG QIN
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